Variant report

Variant	rs11547948
Chromosome Location	chr3:155588465-155588466
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:17)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:155520264..155525290-chr3:155586627..155590296,8	K562	blood:
2	chr3:155461486..155465793-chr3:155586998..155592801,6	K562	blood:
3	chr3:155461523..155464397-chr3:155587900..155591398,5	MCF-7	breast:
4	chr3:155568718..155574348-chr3:155586235..155593210,15	K562	blood:
5	chr3:155461195..155464539-chr3:155588373..155590107,3	MCF-7	breast:
6	chr14:24036599..24037349-chr3:155587998..155588957,2	HCT-116	colon:
7	chr19:571619..572299-chr3:155588026..155588830,2	Hela-S3	cervix:
8	chr10:27530732..27532552-chr3:155587161..155588906,2	MCF-7	breast:
9	chr3:155520823..155524412-chr3:155585049..155590112,5	MCF-7	breast:
10	chr3:155522036..155526613-chr3:155586597..155592084,8	K562	blood:
11	chr3:155570444..155573449-chr3:155586982..155591161,10	MCF-7	breast:
12	chr3:155522507..155525053-chr3:155587874..155590161,2	MCF-7	breast:
13	chr3:155477418..155480054-chr3:155586699..155588871,2	MCF-7	breast:
14	chr20:52490662..52493657-chr3:155587949..155590436,2	MCF-7	breast:
15	chr3:155588335..155588840-chr3:196668960..196669519,2	Hela-S3	cervix:
16	chr3:155461486..155463918-chr3:155586998..155589713,4	K562	blood:
17	chr3:155569630..155574596-chr3:155585012..155589734,13	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000169359	Chromatin interaction
ENSG00000262412	Chromatin interaction
ENSG00000107897	Chromatin interaction
ENSG00000174928	Chromatin interaction
ENSG00000114805	Chromatin interaction
ENSG00000241721	Chromatin interaction
ENSG00000267751	Chromatin interaction
ENSG00000214919	Chromatin interaction
ENSG00000213983	Chromatin interaction
ENSG00000270170	Chromatin interaction
ENSG00000241307	Chromatin interaction
ENSG00000114503	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877680	chr3:155438022-155723064	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2753744	chr3:155487298-155707298	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv877681	chr3:155535670-155654017	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	esv3325134	chr3:155587683-155590231	Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155587400-155590000	Active TSS	Aorta	Aorta
2	chr3:155587400-155590600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr3:155587400-155590600	Active TSS	HepG2	liver
4	chr3:155587400-155591000	Active TSS	H1 Cell Line	embryonic stem cell
5	chr3:155587600-155588600	Active TSS	Fetal Brain Female	brain
6	chr3:155587600-155590000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
7	chr3:155587600-155590000	Active TSS	Placenta Amnion	Placenta Amnion
8	chr3:155587600-155590000	Active TSS	HSMM	muscle
9	chr3:155587600-155590200	Active TSS	H9 Cell Line	embryonic stem cell
10	chr3:155587600-155590200	Active TSS	Left Ventricle	heart
11	chr3:155587600-155590200	Active TSS	Right Atrium	heart
12	chr3:155587600-155590200	Active TSS	Right Ventricle	heart
13	chr3:155587600-155590200	Active TSS	A549	lung
14	chr3:155587600-155590400	Active TSS	ES-I3 Cell Line	embryonic stem cell
15	chr3:155587600-155590400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr3:155587600-155590400	Active TSS	iPS-15b Cell Line	embryonic stem cell
17	chr3:155587600-155590400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr3:155587600-155590800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr3:155587600-155591000	Active TSS	iPS-20b Cell Line	embryonic stem cell
20	chr3:155587800-155589400	Active TSS	Colonic Mucosa	Colon
21	chr3:155587800-155589800	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr3:155587800-155589800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr3:155587800-155589800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr3:155587800-155589800	Active TSS	Esophagus	oesophagus
25	chr3:155587800-155589800	Active TSS	Lung	lung
26	chr3:155587800-155590000	Active TSS	Colon Smooth Muscle	Colon
27	chr3:155587800-155590000	Active TSS	Fetal Kidney	kidney
28	chr3:155587800-155590000	Active TSS	Pancreatic Islets	Pancreatic Islet
29	chr3:155587800-155590000	Active TSS	Gastric	stomach
30	chr3:155587800-155590000	Active TSS	Psoas Muscle	Psoas
31	chr3:155587800-155590000	Active TSS	Sigmoid Colon	Sigmoid Colon
32	chr3:155587800-155590000	Active TSS	Small Intestine	intestine
33	chr3:155587800-155590200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
34	chr3:155587800-155590200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr3:155587800-155590200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr3:155587800-155590200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr3:155587800-155590200	Active TSS	Ovary	ovary
38	chr3:155587800-155590600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr3:155588000-155588600	Active TSS	Primary B cells from cord blood	blood
40	chr3:155588000-155588600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr3:155588000-155588600	Enhancers	Fetal Brain Male	brain
42	chr3:155588000-155588800	Active TSS	Primary hematopoietic stem cells	blood
43	chr3:155588000-155589400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr3:155588000-155589400	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr3:155588000-155589400	Active TSS	Skeletal Muscle Female	skeletal muscle
46	chr3:155588000-155589600	Active TSS	Primary monocytes fromperipheralblood	blood
47	chr3:155588000-155589600	Active TSS	Primary B cells from peripheral blood	blood
48	chr3:155588000-155589600	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
49	chr3:155588000-155589600	Active TSS	Primary T regulatory cells fromperipheralblood	blood
50	chr3:155588000-155589600	Active TSS	Primary T killer naive cells fromperipheralblood	blood

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