The 2.0 version of rSNPBase

Variant report

Variant rs11549673
Chromosome Location chr3:50362371-50362372
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:125 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:50359600-50363000 Weak transcription HSMMtube muscle
2 chr3:50359600-50364200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
3 chr3:50359600-50364400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
4 chr3:50359600-50364600 Weak transcription Small Intestine intestine
5 chr3:50359800-50362400 Enhancers Primary Natural Killer cells fromperipheralblood blood
6 chr3:50359800-50362400 Weak transcription HMEC breast
7 chr3:50359800-50362600 Weak transcription Osteobl bone
8 chr3:50359800-50364000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
9 chr3:50359800-50364400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
10 chr3:50359800-50364400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
11 chr3:50359800-50364400 Weak transcription Primary T killer memory cells from peripheral blood blood
12 chr3:50359800-50364600 Weak transcription Aorta Aorta
13 chr3:50359800-50364800 Enhancers Primary monocytes fromperipheralblood blood
14 chr3:50359800-50364800 Enhancers Primary B cells from cord blood blood
15 chr3:50360000-50362400 Enhancers Primary hematopoietic stem cells blood
16 chr3:50360000-50362600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
17 chr3:50360000-50362600 Weak transcription Primary T helper cells fromperipheralblood blood
18 chr3:50360000-50362600 Weak transcription Sigmoid Colon Sigmoid Colon
19 chr3:50360000-50363000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
20 chr3:50360000-50364200 Weak transcription Primary T killer naive cells fromperipheralblood blood
21 chr3:50360000-50364400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
22 chr3:50360000-50364400 Weak transcription GM12878-XiMat blood
23 chr3:50360200-50362400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
24 chr3:50360200-50363000 Weak transcription Muscle Satellite Cultured Cells --
25 chr3:50360200-50364400 Weak transcription Placenta Amnion Placenta Amnion
26 chr3:50360200-50364600 Weak transcription NHDF-Ad bronchial
27 chr3:50360400-50362600 Enhancers Duodenum Mucosa Duodenum
28 chr3:50360400-50362600 Weak transcription Esophagus oesophagus
29 chr3:50360400-50362600 Genic enhancers Fetal Intestine Small intestine
30 chr3:50360400-50362800 Enhancers Spleen Spleen
31 chr3:50360400-50363200 Weak transcription Primary B cells from peripheral blood blood
32 chr3:50360400-50364400 Weak transcription Fetal Brain Male brain
33 chr3:50360400-50364400 Weak transcription Psoas Muscle Psoas
34 chr3:50360600-50362600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
35 chr3:50360600-50362600 Genic enhancers Foreskin Fibroblast Primary Cells skin02 Skin
36 chr3:50360600-50362600 Weak transcription Ovary ovary
37 chr3:50360600-50363000 Weak transcription Rectal Mucosa Donor 31 rectum
38 chr3:50360600-50364800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
39 chr3:50360600-50364800 Weak transcription Fetal Kidney kidney
40 chr3:50360800-50362400 Genic enhancers Fetal Muscle Trunk muscle
41 chr3:50361000-50362400 Enhancers Brain Angular Gyrus brain
42 chr3:50361000-50362600 Enhancers Liver Liver
43 chr3:50361000-50362800 Genic enhancers Fetal Adrenal Gland Adrenal Gland
44 chr3:50361000-50363200 Weak transcription H9 Cell Line embryonic stem cell
45 chr3:50361000-50363800 Strong transcription Brain Germinal Matrix brain
46 chr3:50361000-50364200 Strong transcription Fetal Brain Female brain
47 chr3:50361200-50362600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
48 chr3:50361200-50363200 Strong transcription Dnd41 blood
49 chr3:50361200-50364000 Strong transcription Thymus Thymus
50 chr3:50361200-50364200 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin

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Last update: Aug 31, 2015