Variant report

Variant	rs1155347
Chromosome Location	chr6:39146230-39146231
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10456468	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12211281	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55856036	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55902013	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56015508	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62398607	0.83[EUR][1000 genomes]
rs9394577	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028088	chr6:38821047-39163549	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv538205	chr6:38821047-39163549	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv830644	chr6:39116530-39325980	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv1022974	chr6:39120271-39277553	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv524717	chr6:39139764-39149140	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39138800-39146400	Weak transcription	Stomach Mucosa	stomach
2	chr6:39139600-39157600	Weak transcription	Ovary	ovary
3	chr6:39140000-39148800	Weak transcription	Pancreas	Pancrea
4	chr6:39140200-39147800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:39145400-39154600	Weak transcription	Gastric	stomach
6	chr6:39145600-39152200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr6:39145800-39152400	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr6:39146000-39146400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr6:39146000-39147400	Enhancers	Fetal Intestine Large	intestine
10	chr6:39146200-39147600	Enhancers	Fetal Intestine Small	intestine
11	chr6:39146200-39148600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr6:39146200-39152800	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr6:39146200-39160400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links