Variant report

Variant	rs11556801
Chromosome Location	chr16:30778156-30778157
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA1	chr16:30778095-30778470	PBDEFetal	blood:	n/a	chr16:30778225-30778235 chr16:30778228-30778235 chr16:30778228-30778237
2	POLR2A	chr16:30777264-30778461	K562	blood:	n/a	n/a
3	POLR2A	chr16:30777892-30778217	Hela-S3	cervix:	n/a	n/a
4	POLR2A	chr16:30777776-30778481	K562	blood:	n/a	n/a
5	GATA1	chr16:30777843-30778670	PBDE	blood:	n/a	chr16:30778225-30778235 chr16:30778228-30778235 chr16:30778228-30778237
6	POLR2A	chr16:30777894-30778494	K562	blood:	n/a	n/a
7	POLR2A	chr16:30778046-30778243	H1-hESC	embryonic stem cell:	n/a	n/a
8	POLR2A	chr16:30777631-30778413	K562	blood:	n/a	n/a
9	POLR2A	chr16:30778050-30778207	K562	blood:	n/a	n/a
10	POLR2A	chr16:30778030-30778281	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr16:30776330..30778748-chr16:30824308..30826910,2	MCF-7	breast:
2	chr16:30709491..30711617-chr16:30777557..30779616,3	K562	blood:
3	chr16:30775867..30778548-chr16:30959923..30961895,2	K562	blood:
4	chr16:30775867..30779905-chr16:30959923..30961895,3	K562	blood:
5	chr16:30775945..30778308-chr16:30932961..30936468,4	MCF-7	breast:
6	chr16:30675275..30677397-chr16:30777195..30778721,2	MCF-7	breast:
7	chr16:30777672..30780063-chr16:30933976..30935997,2	K562	blood:
8	chr16:30709491..30711617-chr16:30777557..30779152,2	K562	blood:

Variant related genes	Relation type
C16orf93	TF binding region
RNF40	TF binding region
ENSG00000080603	Chromatin interaction
ENSG00000175938	Chromatin interaction
ENSG00000261840	Chromatin interaction
ENSG00000099364	Chromatin interaction
ENSG00000260852	Chromatin interaction
ENSG00000156860	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11538958	1.00[LWK][hapmap]
rs12596375	1.00[CHD][hapmap]
rs35974081	1.00[LWK][hapmap]
rs7185757	1.00[LWK][hapmap]
rs7203801	1.00[CHD][hapmap]
rs9925349	1.00[CHD][hapmap]
rs9926903	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062456	chr16:30442166-31253997	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	437 gene(s)	inside rSNPs	diseases
2	nsv542898	chr16:30442166-31253997	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	437 gene(s)	inside rSNPs	diseases
3	nsv469724	chr16:30632445-30840263	Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	143 gene(s)	inside rSNPs	diseases
4	nsv482704	chr16:30632445-30840263	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	143 gene(s)	inside rSNPs	diseases
5	nsv833188	chr16:30632446-30840263	Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	143 gene(s)	inside rSNPs	diseases
6	nsv1064134	chr16:30640293-31087327	Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	238 gene(s)	inside rSNPs	diseases
7	nsv905728	chr16:30642867-30928970	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	171 gene(s)	inside rSNPs	diseases
8	nsv905729	chr16:30642867-31247924	Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	387 gene(s)	inside rSNPs	diseases
9	esv1825223	chr16:30669091-30971810	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
10	nsv431451	chr16:30682399-31340999	Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	350 gene(s)	inside rSNPs	diseases
11	nsv9438	chr16:30770203-30799442	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:30774200-30786600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr16:30774400-30780800	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr16:30774600-30781400	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr16:30774600-30785400	Strong transcription	H9 Cell Line	embryonic stem cell
5	chr16:30774600-30786200	Strong transcription	HUES48 Cell Line	embryonic stem cell
6	chr16:30774800-30778200	Genic enhancers	Right Ventricle	heart
7	chr16:30774800-30785000	Strong transcription	iPS-15b Cell Line	embryonic stem cell
8	chr16:30774800-30785800	Strong transcription	H1 Cell Line	embryonic stem cell
9	chr16:30774800-30786200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr16:30774800-30786400	Strong transcription	HUES6 Cell Line	embryonic stem cell
11	chr16:30775000-30784200	Strong transcription	HSMMtube	muscle
12	chr16:30775000-30784400	Strong transcription	Primary B cells from cord blood	blood
13	chr16:30775000-30785400	Strong transcription	Aorta	Aorta
14	chr16:30775000-30785800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr16:30775000-30785800	Strong transcription	Brain Substantia Nigra	brain
16	chr16:30775000-30786000	Strong transcription	Sigmoid Colon	Sigmoid Colon
17	chr16:30775000-30786000	Strong transcription	NH-A	brain
18	chr16:30775000-30786200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr16:30775000-30786200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr16:30775000-30786200	Strong transcription	Fetal Thymus	thymus
21	chr16:30775000-30786400	Strong transcription	Thymus	Thymus
22	chr16:30775200-30778400	Strong transcription	Primary B cells from peripheral blood	blood
23	chr16:30775200-30781200	Strong transcription	ES-I3 Cell Line	embryonic stem cell
24	chr16:30775200-30781400	Strong transcription	HSMM	muscle
25	chr16:30775200-30785200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
26	chr16:30775200-30785400	Strong transcription	HUES64 Cell Line	embryonic stem cell
27	chr16:30775200-30785600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr16:30775200-30785600	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr16:30775200-30785800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr16:30775200-30785800	Strong transcription	Primary monocytes fromperipheralblood	blood
31	chr16:30775200-30785800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr16:30775200-30785800	Strong transcription	Placenta Amnion	Placenta Amnion
33	chr16:30775200-30786000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
34	chr16:30775200-30786000	Strong transcription	Primary hematopoietic stem cells	blood
35	chr16:30775200-30786000	Strong transcription	Rectal Mucosa Donor 31	rectum
36	chr16:30775200-30786000	Strong transcription	HUVEC	blood vessel
37	chr16:30775200-30786000	Strong transcription	NHLF	lung
38	chr16:30775200-30786200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
39	chr16:30775200-30786200	Strong transcription	A549	lung
40	chr16:30775400-30778200	Strong transcription	Psoas Muscle	Psoas
41	chr16:30775400-30778600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr16:30775400-30779400	Strong transcription	Fetal Kidney	kidney
43	chr16:30775400-30781200	Strong transcription	NHDF-Ad	bronchial
44	chr16:30775400-30781400	Strong transcription	NHEK	skin
45	chr16:30775400-30785400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr16:30775400-30785400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr16:30775400-30785600	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr16:30775400-30785800	Strong transcription	Cortex derived primary cultured neurospheres	brain
49	chr16:30775400-30786000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr16:30775400-30786000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links