Variant report

Variant	rs11557361
Chromosome Location	chr4:148560193-148560194
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10305853	1.00[MEX][hapmap]
rs10305856	1.00[LWK][hapmap]
rs12508763	1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028958	chr4:148377752-148793485	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv830110	chr4:148432125-148595119	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv428776	chr4:148432125-148595119	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv498083	chr4:148519825-148917583	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
5	nsv1019205	chr4:148524852-148576265	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148539400-148576800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:148540800-148561000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:148541400-148563400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:148542200-148564200	Strong transcription	Fetal Thymus	thymus
5	chr4:148542400-148560400	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr4:148542400-148562200	Weak transcription	Fetal Brain Male	brain
7	chr4:148542400-148575000	Weak transcription	Small Intestine	intestine
8	chr4:148542400-148576600	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr4:148542600-148565200	Weak transcription	Fetal Heart	heart
10	chr4:148542600-148567400	Weak transcription	Stomach Mucosa	stomach
11	chr4:148543000-148560400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr4:148543200-148560800	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr4:148543800-148560200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr4:148543800-148560200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr4:148543800-148560400	Strong transcription	HSMM	muscle
16	chr4:148543800-148563800	Strong transcription	Primary neutrophils fromperipheralblood	blood
17	chr4:148543800-148564200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr4:148543800-148565400	Strong transcription	Liver	Liver
19	chr4:148544400-148560200	Strong transcription	Primary T helper cells PMA-I stimulated	--
20	chr4:148544600-148560600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr4:148548400-148599800	Weak transcription	Gastric	stomach
22	chr4:148548600-148604400	Weak transcription	Esophagus	oesophagus
23	chr4:148548800-148562000	Weak transcription	Right Ventricle	heart
24	chr4:148549000-148576400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr4:148549000-148599800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr4:148549400-148563400	Strong transcription	Dnd41	blood
27	chr4:148549600-148560200	Strong transcription	Primary hematopoietic stem cells	blood
28	chr4:148551400-148603600	Weak transcription	Hela-S3	cervix
29	chr4:148551800-148560200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr4:148553200-148564200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr4:148553800-148560400	Strong transcription	Primary T cells from cord blood	blood
32	chr4:148553800-148560400	Strong transcription	Duodenum Smooth Muscle	Duodenum
33	chr4:148553800-148560400	Strong transcription	Skeletal Muscle Female	skeletal muscle
34	chr4:148553800-148561000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr4:148554000-148560200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr4:148554000-148564400	Strong transcription	Primary B cells from cord blood	blood
37	chr4:148554600-148560400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr4:148554600-148561800	Weak transcription	Spleen	Spleen
39	chr4:148554600-148604600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr4:148555600-148562200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr4:148555600-148569200	Weak transcription	Brain Substantia Nigra	brain
42	chr4:148556000-148560200	Weak transcription	HSMMtube	muscle
43	chr4:148556000-148574800	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr4:148556000-148581000	Weak transcription	Brain Angular Gyrus	brain
45	chr4:148556000-148603800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr4:148556200-148561800	Weak transcription	Fetal Intestine Small	intestine
47	chr4:148556200-148561800	Weak transcription	Fetal Stomach	stomach
48	chr4:148556200-148561800	Weak transcription	Lung	lung
49	chr4:148556200-148562600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr4:148556200-148563000	Weak transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links