Variant report

Variant	rs1155778
Chromosome Location	chr2:153405829-153405830
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:153398378..153401093-chr2:153404602..153406288,2	K562	blood:
2	chr2:153404988..153407873-chr2:153447899..153450300,2	MCF-7	breast:
3	chr2:153404390..153407009-chr2:153409693..153412002,2	MCF-7	breast:
4	chr2:153405062..153407752-chr2:153411170..153412787,2	K562	blood:
5	chr2:153401629..153403844-chr2:153404916..153407132,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1529998	0.95[ASN][1000 genomes]
rs16831263	0.85[CHB][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2577175	0.95[ASN][1000 genomes]
rs2577177	0.92[ASN][1000 genomes]
rs2577178	0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2678294	0.86[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2678296	0.85[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs2678298	0.92[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs2678302	0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4664594	0.92[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs56281840	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6709843	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6713711	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6739300	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6739557	0.81[CHB][hapmap];0.91[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72868235	0.97[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7579511	0.92[CHB][hapmap];0.90[JPT][hapmap];0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3693436	chr2:153219836-153479857	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1013777	chr2:153273637-153538546	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv834420	chr2:153339646-153535460	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:153398000-153406800	Enhancers	Brain Inferior Temporal Lobe	brain
2	chr2:153398200-153406400	Enhancers	Brain Angular Gyrus	brain
3	chr2:153398800-153406200	Enhancers	Brain Hippocampus Middle	brain
4	chr2:153399200-153407800	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr2:153399200-153427800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr2:153399400-153414200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr2:153399400-153427600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr2:153399400-153429600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr2:153399600-153411800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr2:153399600-153415200	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr2:153399600-153415400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr2:153399600-153415800	Weak transcription	Aorta	Aorta
13	chr2:153400000-153414000	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr2:153400000-153415800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr2:153400000-153420800	Weak transcription	Hela-S3	cervix
16	chr2:153400000-153438000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr2:153400000-153468200	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr2:153400200-153406000	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr2:153400200-153406400	Enhancers	Brain Cingulate Gyrus	brain
20	chr2:153400200-153410600	Weak transcription	HSMMtube	muscle
21	chr2:153400200-153415400	Weak transcription	Stomach Smooth Muscle	stomach
22	chr2:153400400-153411200	Weak transcription	A549	lung
23	chr2:153400600-153406200	Strong transcription	HepG2	liver
24	chr2:153400600-153411000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr2:153400600-153415200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr2:153400600-153433400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr2:153400600-153442000	Weak transcription	Rectal Smooth Muscle	rectum
28	chr2:153401600-153417400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr2:153401800-153406800	Weak transcription	HUVEC	blood vessel
30	chr2:153402200-153411600	Weak transcription	Fetal Brain Male	brain
31	chr2:153402200-153427400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr2:153402400-153427000	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr2:153402600-153406800	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr2:153403200-153415200	Weak transcription	Placenta	Placenta
35	chr2:153403200-153448000	Weak transcription	Lung	lung
36	chr2:153403400-153407200	Enhancers	Brain Substantia Nigra	brain
37	chr2:153403600-153418800	Weak transcription	Fetal Intestine Large	intestine
38	chr2:153403800-153406400	Strong transcription	NHEK	skin
39	chr2:153404000-153407600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr2:153404000-153408600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr2:153404000-153415800	Weak transcription	Fetal Intestine Small	intestine
42	chr2:153404200-153406800	Strong transcription	HMEC	breast
43	chr2:153404200-153411600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr2:153404200-153415200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr2:153404200-153415400	Weak transcription	Fetal Brain Female	brain
46	chr2:153404200-153442400	Weak transcription	Fetal Muscle Trunk	muscle
47	chr2:153404400-153406000	Enhancers	Osteobl	bone
48	chr2:153404400-153406200	Enhancers	Fetal Kidney	kidney
49	chr2:153404400-153406400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr2:153404400-153406800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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