Variant report

Variant	rs11559385
Chromosome Location	chr9:85843873-85843874
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1048228	1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs1074087	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10867953	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62560444	0.90[ASN][1000 genomes]
rs7857822	0.85[AFR][1000 genomes]
rs7874181	0.95[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85843400-85844000	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr9:85843400-85844000	Active TSS	H1 Cell Line	embryonic stem cell
3	chr9:85843400-85844000	Active TSS	HUES6 Cell Line	embryonic stem cell
4	chr9:85843400-85844000	Active TSS	iPS-15b Cell Line	embryonic stem cell
5	chr9:85843400-85844000	Active TSS	iPS-18 Cell Line	embryonic stem cell
6	chr9:85843600-85844000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
7	chr9:85843800-85844000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
8	chr9:85843800-85844200	Enhancers	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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