Variant report

Variant	rs11559871
Chromosome Location	chr12:105682984-105682985
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:105682564..105686688-chr12:105688570..105690485,3	K562	blood:
2	chr12:105681803..105683314-chr12:105684988..105687486,2	K562	blood:
3	chr12:105682504..105683036-chr12:105776820..105777391,2	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10083185	0.85[EUR][1000 genomes]
rs11112381	0.85[EUR][1000 genomes]
rs11112389	0.84[EUR][1000 genomes]
rs11112410	0.83[EUR][1000 genomes]
rs11829598	0.85[EUR][1000 genomes]
rs12299366	0.86[EUR][1000 genomes]
rs12299391	0.86[EUR][1000 genomes]
rs12301914	0.86[EUR][1000 genomes]
rs12304384	0.86[EUR][1000 genomes]
rs12305766	0.97[EUR][1000 genomes]
rs12307372	0.83[EUR][1000 genomes]
rs12308444	0.80[EUR][1000 genomes]
rs12311156	0.83[EUR][1000 genomes]
rs12312965	0.85[EUR][1000 genomes]
rs12317637	0.99[EUR][1000 genomes]
rs12317804	0.86[EUR][1000 genomes]
rs12321199	0.86[EUR][1000 genomes]
rs12321518	0.96[EUR][1000 genomes]
rs12321534	0.89[EUR][1000 genomes]
rs12424191	0.96[EUR][1000 genomes]
rs12424709	0.96[EUR][1000 genomes]
rs12425803	0.85[EUR][1000 genomes]
rs56284118	0.85[EUR][1000 genomes]
rs56862143	0.85[EUR][1000 genomes]
rs59320697	0.96[EUR][1000 genomes]
rs59593474	0.86[EUR][1000 genomes]
rs60835294	0.85[EUR][1000 genomes]
rs60999193	0.86[EUR][1000 genomes]
rs7132816	0.83[EUR][1000 genomes]
rs7133728	0.82[EUR][1000 genomes]
rs7136453	0.85[EUR][1000 genomes]
rs7138574	0.83[EUR][1000 genomes]
rs7300130	0.83[EUR][1000 genomes]
rs7302842	0.83[EUR][1000 genomes]
rs7305406	0.96[EUR][1000 genomes]
rs7313309	0.85[EUR][1000 genomes]
rs7315964	0.85[EUR][1000 genomes]
rs73179990	0.85[EUR][1000 genomes]
rs73179996	0.85[EUR][1000 genomes]
rs73179998	0.85[EUR][1000 genomes]
rs73180001	0.85[EUR][1000 genomes]
rs73181822	0.88[EUR][1000 genomes]
rs73181857	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7964184	0.85[EUR][1000 genomes]
rs7971630	0.83[EUR][1000 genomes]
rs7975787	0.83[EUR][1000 genomes]
rs7978034	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899499	chr12:105616297-105722529	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv510589	chr12:105670071-105743755	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105681600-105686200	Weak transcription	A549	lung
2	chr12:105681800-105683000	Weak transcription	HepG2	liver
3	chr12:105682400-105686200	Weak transcription	Stomach Mucosa	stomach
4	chr12:105682800-105683200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
5	chr12:105682800-105683200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr12:105682800-105683600	Enhancers	HUVEC	blood vessel
7	chr12:105682800-105686600	Weak transcription	Osteobl	bone

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