Variant report

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10249892	0.85[JPT][hapmap]
rs10269341	0.81[CHB][hapmap];0.80[JPT][hapmap];0.80[ASN][1000 genomes]
rs12055899	0.85[CEU][hapmap]
rs12535679	0.85[CEU][hapmap];0.81[CHB][hapmap];0.86[AMR][1000 genomes]
rs12669128	0.85[CEU][hapmap];0.81[CHB][hapmap];0.86[AMR][1000 genomes]
rs12672949	0.82[AMR][1000 genomes]
rs2072506	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2083146	0.85[JPT][hapmap]
rs2270294	0.85[CEU][hapmap]
rs2276537	0.86[AMR][1000 genomes]
rs2299948	0.85[CHB][hapmap]
rs2302611	0.85[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap];0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2392578	0.80[AMR][1000 genomes]
rs2893560	0.85[CEU][hapmap];0.86[AMR][1000 genomes]
rs3778880	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3807398	0.85[JPT][hapmap];0.83[AMR][1000 genomes]
rs3807401	0.85[CEU][hapmap];0.83[AMR][1000 genomes]
rs3807405	0.85[CEU][hapmap];0.82[AMR][1000 genomes]
rs3807407	0.85[CEU][hapmap];0.82[AMR][1000 genomes]
rs3823590	0.83[AMR][1000 genomes]
rs3823593	0.81[CHB][hapmap];0.80[ASN][1000 genomes]
rs4574754	0.80[AMR][1000 genomes]
rs4720284	0.81[CHB][hapmap]
rs4723755	0.81[CHB][hapmap]
rs4723764	0.85[CEU][hapmap];0.83[AMR][1000 genomes]
rs6944037	0.81[CHB][hapmap]
rs6952250	0.82[CEU][hapmap]
rs6966612	0.81[CHB][hapmap]
rs730582	0.85[CEU][hapmap];0.85[JPT][hapmap]
rs7780577	0.85[CEU][hapmap];0.83[AMR][1000 genomes]
rs9639797	0.85[CEU][hapmap];0.83[AMR][1000 genomes]
rs9639798	0.85[CEU][hapmap];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932229	chr7:38248340-38727527	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv830966	chr7:38393663-38602553	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38502600-38549400	Weak transcription	Fetal Stomach	stomach
2	chr7:38502800-38533800	Weak transcription	Aorta	Aorta
3	chr7:38522200-38524200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:38524000-38543400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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