Variant report

Variant	rs11562685
Chromosome Location	chr8:119071377-119071378
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11562722	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11562726	0.95[YRI][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11562757	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11562759	0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11562760	0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11562762	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11562815	0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17476840	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17476847	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17476854	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17476861	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17505659	0.96[YRI][hapmap];1.00[AFR][1000 genomes]
rs59103602	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030459	chr8:118840179-119155835	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv612047	chr8:118939094-119468609	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1015380	chr8:118948652-119418389	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv539736	chr8:118948652-119418389	Flanking Active TSS Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv831441	chr8:119055370-119262970	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
6	esv2752195	chr8:119058819-119139819	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119062000-119072800	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr8:119062200-119083600	Weak transcription	Fetal Muscle Leg	muscle
3	chr8:119062800-119085000	Weak transcription	Fetal Stomach	stomach
4	chr8:119065000-119071800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr8:119065400-119073000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr8:119065600-119072800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr8:119065600-119072800	Weak transcription	Ovary	ovary
8	chr8:119065600-119072800	Weak transcription	Spleen	Spleen
9	chr8:119065600-119073200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr8:119065600-119074600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr8:119065600-119079600	Weak transcription	Stomach Smooth Muscle	stomach
12	chr8:119066000-119076000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr8:119066200-119072200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr8:119066200-119074600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr8:119066200-119077600	Weak transcription	Fetal Intestine Small	intestine
16	chr8:119066800-119077600	Weak transcription	Duodenum Mucosa	Duodenum
17	chr8:119066800-119077600	Weak transcription	HepG2	liver
18	chr8:119068000-119076000	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr8:119068000-119077400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr8:119068000-119085600	Weak transcription	Fetal Muscle Trunk	muscle
21	chr8:119069000-119071400	Weak transcription	HSMMtube	muscle
22	chr8:119069000-119072800	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr8:119069000-119072800	Weak transcription	Stomach Mucosa	stomach
24	chr8:119069000-119074400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr8:119069000-119081200	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr8:119069200-119071400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr8:119069200-119071400	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr8:119069200-119071600	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr8:119069200-119072200	Weak transcription	Primary monocytes fromperipheralblood	blood
30	chr8:119069200-119072200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr8:119069200-119072600	Weak transcription	Left Ventricle	heart
32	chr8:119069200-119073000	Weak transcription	Small Intestine	intestine
33	chr8:119069200-119074400	Weak transcription	Right Ventricle	heart
34	chr8:119069200-119078000	Weak transcription	Gastric	stomach
35	chr8:119069200-119078000	Weak transcription	Pancreas	Pancrea
36	chr8:119069200-119081200	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr8:119069200-119091600	Weak transcription	Primary T cells from cord blood	blood
38	chr8:119069400-119072200	Weak transcription	Monocytes-CD14+_RO01746	blood
39	chr8:119069400-119072400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr8:119069400-119072600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr8:119069400-119072600	Weak transcription	Liver	Liver
42	chr8:119069400-119072600	Weak transcription	NHLF	lung
43	chr8:119069400-119072800	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr8:119069400-119073000	Weak transcription	Right Atrium	heart
45	chr8:119069400-119075400	Weak transcription	HSMM	muscle
46	chr8:119069400-119077600	Weak transcription	A549	lung
47	chr8:119069600-119071400	Weak transcription	Osteobl	bone
48	chr8:119069600-119072800	Weak transcription	NHDF-Ad	bronchial
49	chr8:119069600-119074000	Weak transcription	HUVEC	blood vessel
50	chr8:119069600-119075400	Weak transcription	NH-A	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links