Variant report

Variant	rs11562772
Chromosome Location	chr8:118979174-118979175
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:118968228..118970713-chr8:118979031..118981216,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10087446	1.00[YRI][hapmap]
rs11562773	1.00[CHB][hapmap];0.87[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11989463	1.00[CHB][hapmap]
rs13256042	1.00[YRI][hapmap]
rs1466429	1.00[YRI][hapmap]
rs17439693	1.00[CHB][hapmap]
rs7014925	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933516	chr8:118764605-119009093	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1030459	chr8:118840179-119155835	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv831440	chr8:118871930-119052269	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1032355	chr8:118896733-119003223	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv612047	chr8:118939094-119468609	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	nsv1015380	chr8:118948652-119418389	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
7	nsv539736	chr8:118948652-119418389	Flanking Active TSS Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
8	nsv1025002	chr8:118970940-119069418	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118969800-118986800	Weak transcription	Lung	lung
2	chr8:118970200-118981800	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr8:118970400-118989800	Weak transcription	HSMMtube	muscle
4	chr8:118970600-118981800	Weak transcription	Fetal Lung	lung
5	chr8:118970800-118989000	Weak transcription	HUVEC	blood vessel
6	chr8:118971600-118993000	Weak transcription	Psoas Muscle	Psoas
7	chr8:118971800-118979600	Weak transcription	Fetal Intestine Small	intestine
8	chr8:118971800-118981800	Weak transcription	NH-A	brain
9	chr8:118971800-118983200	Weak transcription	Pancreas	Pancrea
10	chr8:118971800-118989000	Weak transcription	Ovary	ovary
11	chr8:118972000-118989600	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr8:118972200-118979400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr8:118972200-118981800	Weak transcription	Aorta	Aorta
14	chr8:118972200-118989600	Weak transcription	HSMM	muscle
15	chr8:118972200-118997000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr8:118973400-118981600	Weak transcription	HMEC	breast
17	chr8:118973400-118982000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr8:118973400-118982000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr8:118973600-118981200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr8:118973600-118981600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr8:118974400-118981600	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr8:118974400-118982000	Weak transcription	Fetal Intestine Large	intestine
23	chr8:118974600-118987800	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr8:118975400-118983200	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr8:118975400-118992400	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr8:118975800-118981200	Weak transcription	NHEK	skin
27	chr8:118975800-118981600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr8:118976000-118981800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr8:118976000-118981800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr8:118976400-118980200	Enhancers	Liver	Liver
31	chr8:118976600-118981800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr8:118976600-118991000	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr8:118976800-118981600	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr8:118976800-118988600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr8:118977200-118983200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr8:118977600-118979200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr8:118977600-118981600	Weak transcription	Osteobl	bone
38	chr8:118977800-118981800	Weak transcription	Duodenum Mucosa	Duodenum
39	chr8:118977800-118981800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr8:118978200-118992000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr8:118978400-118979200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr8:118978400-118979400	Enhancers	NHLF	lung
43	chr8:118978400-118979600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr8:118978400-118980200	Enhancers	Breast Myoepithelial Primary Cells	Breast
45	chr8:118978400-118980200	Enhancers	NHDF-Ad	bronchial
46	chr8:118978600-118981800	Weak transcription	A549	lung
47	chr8:118978600-118993000	Weak transcription	Fetal Muscle Trunk	muscle
48	chr8:118978800-118979200	Enhancers	iPS-18 Cell Line	embryonic stem cell
49	chr8:118978800-118979200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr8:118978800-118979200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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