Variant report

Variant	rs11562784
Chromosome Location	chr8:119292174-119292175
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POU2F2	chr8:119291532-119292251	GM12878	blood:	n/a	chr8:119291759-119291766 chr8:119291928-119291938 chr8:119291926-119291939 chr8:119291926-119291941 chr8:119291924-119291945
2	POU2F2	chr8:119291622-119292292	GM12891	blood:	n/a	chr8:119291759-119291766 chr8:119291928-119291938 chr8:119291926-119291939 chr8:119291926-119291941 chr8:119291924-119291945
3	WRNIP1	chr8:119291768-119292273	GM12878	blood:	n/a	n/a
4	RELA	chr8:119291694-119292308	GM18951	blood:	n/a	n/a
5	BHLHE40	chr8:119291615-119292330	GM12878	blood:	n/a	n/a
6	RCOR1	chr8:119291570-119292221	GM12878	blood:	n/a	n/a
7	CREB1	chr8:119291486-119292180	GM12878	blood:	n/a	n/a
8	RUNX3	chr8:119291467-119292232	GM12878	blood:	n/a	n/a
9	MTA3	chr8:119291433-119292288	GM12878	blood:	n/a	n/a
10	CEBPB	chr8:119291523-119292380	GM12878	blood:	n/a	n/a
11	PML	chr8:119291513-119292207	GM12878	blood:	n/a	n/a
12	MEF2A	chr8:119291498-119292184	GM12878	blood:	n/a	chr8:119291941-119291949
13	ATF2	chr8:119290755-119292196	GM12878	blood:	n/a	n/a
14	TBL1XR1	chr8:119291616-119292183	GM12878	blood:	n/a	n/a
15	FOXM1	chr8:119291483-119292216	GM12878	blood:	n/a	n/a
16	POLR2A	chr8:119290419-119292697	Raji	blood:	n/a	n/a
17	EP300	chr8:119291582-119292217	GM12878	blood:	n/a	chr8:119291937-119291951 chr8:119291938-119291947
18	NFIC	chr8:119291493-119292266	GM12878	blood:	n/a	n/a
19	MTA3	chr8:119291618-119292236	GM12878	blood:	n/a	n/a
20	EBF1	chr8:119291673-119292201	GM12878	blood:	n/a	n/a
21	PAX5	chr8:119291637-119292183	GM12878	blood:	n/a	chr8:119291861-119291870 chr8:119291939-119291948
22	IRF4	chr8:119291559-119292181	GM12878	blood:	n/a	n/a
23	SPI1	chr8:119291449-119292545	GM12878	blood:	n/a	n/a
24	EP300	chr8:119291567-119292369	GM12878	blood:	n/a	chr8:119291937-119291951 chr8:119291938-119291947
25	FOXM1	chr8:119291461-119292233	GM12878	blood:	n/a	n/a
26	NFIC	chr8:119291348-119292213	GM12878	blood:	n/a	n/a
27	STAT5A	chr8:119291576-119292324	GM12878	blood:	n/a	chr8:119291836-119291844

Variant related genes	Relation type
ENSG00000225885	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv612047	chr8:118939094-119468609	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1015380	chr8:118948652-119418389	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv539736	chr8:118948652-119418389	Flanking Active TSS Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv821660	chr8:119082062-119312183	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv1032681	chr8:119153316-119609948	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
6	nsv539737	chr8:119153316-119609948	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	nsv1016379	chr8:119164234-119448910	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
8	nsv831442	chr8:119181675-119390122	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119208400-119292400	Weak transcription	Pancreas	Pancrea
2	chr8:119286200-119298800	Weak transcription	Esophagus	oesophagus
3	chr8:119289400-119292800	Enhancers	Brain Hippocampus Middle	brain
4	chr8:119290200-119296600	Enhancers	Primary B cells from peripheral blood	blood
5	chr8:119290400-119292800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr8:119290400-119293000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr8:119290400-119293200	Enhancers	Fetal Thymus	thymus
8	chr8:119290400-119293800	Enhancers	Adipose Nuclei	Adipose
9	chr8:119290400-119295000	Enhancers	Primary B cells from cord blood	blood
10	chr8:119290400-119299000	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr8:119290600-119292200	Enhancers	NHDF-Ad	bronchial
12	chr8:119290600-119292600	Enhancers	Primary T cells from cord blood	blood
13	chr8:119290600-119292800	Enhancers	Thymus	Thymus
14	chr8:119290600-119293000	Flanking Active TSS	GM12878-XiMat	blood
15	chr8:119290600-119293600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr8:119290800-119292400	Enhancers	Fetal Lung	lung
17	chr8:119291000-119292600	Weak transcription	Ovary	ovary
18	chr8:119291000-119292800	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr8:119291000-119292800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
20	chr8:119291000-119293400	Enhancers	Primary hematopoietic stem cells	blood
21	chr8:119291200-119293000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
22	chr8:119291200-119293000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr8:119291400-119292800	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr8:119291600-119292800	Enhancers	Brain Substantia Nigra	brain
25	chr8:119291600-119293200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr8:119291800-119292200	Enhancers	Fetal Brain Female	brain
27	chr8:119291800-119292200	Enhancers	HUVEC	blood vessel
28	chr8:119291800-119292400	Enhancers	Brain Angular Gyrus	brain
29	chr8:119291800-119292400	Enhancers	Brain Inferior Temporal Lobe	brain
30	chr8:119292000-119292200	Flanking Active TSS	Fetal Brain Male	brain
31	chr8:119292000-119292400	Enhancers	Fetal Muscle Leg	muscle
32	chr8:119292000-119292600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
33	chr8:119292000-119292800	Enhancers	Pancreatic Islets	Pancreatic Islet
34	chr8:119292000-119292800	Enhancers	Right Atrium	heart
35	chr8:119292000-119293000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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