Variant report

Variant	rs115633717
Chromosome Location	chr11:68345021-68345022
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:68343924..68346416-chr11:68347081..68348862,2	MCF-7	breast:
2	chr11:68337447..68341541-chr11:68341697..68345653,4	MCF-7	breast:
3	chr11:68343454..68345918-chr11:68348417..68350824,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000110075	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431317	chr11:68282676-68411867	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3478641	chr11:68282679-68411856	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	esv3478652	chr11:68282679-68411856	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	esv3425206	chr11:68282708-68411817	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	esv3511614	chr11:68282726-68411806	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
6	esv3511615	chr11:68282726-68411806	Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	esv3348204	chr11:68282891-68411839	Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
8	nsv832195	chr11:68286383-68474611	Strong transcription Weak transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
9	nsv430403	chr11:68297201-68448324	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
10	nsv972928	chr11:68344202-68352075	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:68283000-68358200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr11:68299200-68384000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr11:68304000-68384400	Strong transcription	Rectal Mucosa Donor 29	rectum
4	chr11:68309400-68384800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:68310400-68347800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
6	chr11:68313400-68356200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
7	chr11:68314000-68347200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr11:68314000-68348000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr11:68314200-68351400	Strong transcription	HUES48 Cell Line	embryonic stem cell
10	chr11:68317000-68384200	Strong transcription	Fetal Muscle Trunk	muscle
11	chr11:68317200-68350200	Strong transcription	Fetal Intestine Large	intestine
12	chr11:68317400-68349600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr11:68317600-68383600	Strong transcription	Placenta	Placenta
14	chr11:68318000-68351400	Strong transcription	HUES6 Cell Line	embryonic stem cell
15	chr11:68318000-68383800	Strong transcription	Fetal Thymus	thymus
16	chr11:68318000-68384000	Strong transcription	Primary T cells fromperipheralblood	blood
17	chr11:68318200-68384200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr11:68318600-68384600	Strong transcription	Primary B cells from cord blood	blood
19	chr11:68319200-68384200	Strong transcription	Duodenum Mucosa	Duodenum
20	chr11:68319800-68384000	Strong transcription	Liver	Liver
21	chr11:68321000-68361800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr11:68321400-68347600	Strong transcription	HSMM	muscle
23	chr11:68323800-68349200	Strong transcription	Duodenum Smooth Muscle	Duodenum
24	chr11:68324200-68349800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr11:68324400-68362000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr11:68324600-68361600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr11:68325600-68361200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr11:68328600-68350000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr11:68328800-68348000	Strong transcription	Primary hematopoietic stem cells	blood
30	chr11:68328800-68348200	Strong transcription	Hela-S3	cervix
31	chr11:68328800-68362000	Strong transcription	Sigmoid Colon	Sigmoid Colon
32	chr11:68328800-68380600	Strong transcription	Fetal Muscle Leg	muscle
33	chr11:68329200-68384400	Strong transcription	Rectal Mucosa Donor 31	rectum
34	chr11:68330200-68355600	Strong transcription	HepG2	liver
35	chr11:68330400-68348000	Strong transcription	Adipose Nuclei	Adipose
36	chr11:68333800-68384000	Strong transcription	Primary monocytes fromperipheralblood	blood
37	chr11:68333800-68384400	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr11:68334200-68347800	Strong transcription	Fetal Lung	lung
39	chr11:68336800-68351200	Strong transcription	Primary B cells from peripheral blood	blood
40	chr11:68336800-68383800	Strong transcription	Dnd41	blood
41	chr11:68337000-68384000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr11:68337200-68347600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr11:68337200-68360600	Strong transcription	Primary T cells from cord blood	blood
44	chr11:68337200-68381000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr11:68337200-68384000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
46	chr11:68337400-68351200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr11:68337400-68361800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr11:68337400-68383400	Strong transcription	Primary T helper cells fromperipheralblood	blood
49	chr11:68337400-68383800	Strong transcription	Primary T helper cells PMA-I stimulated	--
50	chr11:68337600-68352600	Strong transcription	GM12878-XiMat	blood

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