Variant report

Variant	rs1156344
Chromosome Location	chr5:154106701-154106702
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:154081536..154084352-chr5:154105726..154108354,2	K562	blood:
2	chr5:154081082..154084352-chr5:154105726..154108846,3	K562	blood:

Variant related genes	Relation type
ENSG00000263478	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs816724	1.00[AMR][1000 genomes]
rs816725	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021153	chr5:154099869-154147970	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154074200-154108600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr5:154074200-154120000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:154097800-154107800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr5:154102000-154107800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr5:154102200-154111000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr5:154102200-154117400	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr5:154103000-154111000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr5:154103200-154108400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr5:154103400-154107000	Weak transcription	Small Intestine	intestine
10	chr5:154103400-154108000	Weak transcription	Psoas Muscle	Psoas
11	chr5:154103600-154108000	Weak transcription	Pancreas	Pancrea
12	chr5:154103800-154110800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr5:154104000-154120000	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr5:154104200-154106800	Weak transcription	HepG2	liver
15	chr5:154104400-154106800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr5:154104400-154106800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr5:154104400-154107200	Weak transcription	Right Ventricle	heart
18	chr5:154104400-154109400	Weak transcription	Stomach Mucosa	stomach
19	chr5:154104400-154118600	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr5:154104600-154107200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr5:154104600-154117600	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr5:154105200-154106800	Weak transcription	Fetal Intestine Large	intestine
23	chr5:154106400-154107200	Enhancers	Liver	Liver
24	chr5:154106600-154106800	Enhancers	Pancreatic Islets	Pancreatic Islet
25	chr5:154106600-154107200	Enhancers	Duodenum Mucosa	Duodenum

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