Variant report

Variant	rs11563697
Chromosome Location	chr7:126828970-126828971
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17865090	0.80[YRI][hapmap]
rs17865256	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs17865987	1.00[AFR][1000 genomes]
rs17866226	0.89[YRI][hapmap]
rs17866253	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs17867021	1.00[AFR][1000 genomes]
rs61254279	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7783691	1.00[YRI][hapmap];1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889189	chr7:126699088-126963028	Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2761367	chr7:126717157-126865324	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126828200-126830400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr7:126828600-126829200	Enhancers	Brain Hippocampus Middle	brain
3	chr7:126828600-126830400	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr7:126828800-126829200	Enhancers	Brain Cingulate Gyrus	brain
5	chr7:126828800-126829200	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr7:126828800-126829200	Enhancers	Brain Substantia Nigra	brain
7	chr7:126828800-126830200	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr7:126828800-126830400	Enhancers	H1 Cell Line	embryonic stem cell
9	chr7:126828800-126830600	Enhancers	Brain Angular Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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