Variant report

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv605232	chr6:164994771-165401154	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv521153	chr6:165279393-165343557	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv886925	chr6:165319631-165705488	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	esv3410490	chr6:165337362-165341860	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
5	esv3414452	chr6:165337862-165341160	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv3446736	chr6:165338062-165341060	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:165333200-165346200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:165337400-165338800	Enhancers	Fetal Muscle Leg	muscle
3	chr6:165337800-165338600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:165337800-165338600	Enhancers	Brain Anterior Caudate	brain
5	chr6:165337800-165338600	Enhancers	Psoas Muscle	Psoas
6	chr6:165337800-165339400	Enhancers	Fetal Brain Male	brain
7	chr6:165337800-165340400	Enhancers	Brain Cingulate Gyrus	brain
8	chr6:165338000-165338600	Enhancers	Duodenum Smooth Muscle	Duodenum
9	chr6:165338000-165340200	Enhancers	Brain Germinal Matrix	brain
10	chr6:165338200-165338600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
11	chr6:165338200-165338800	Enhancers	Brain Hippocampus Middle	brain
12	chr6:165338200-165341200	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr6:165338200-165341400	Enhancers	Fetal Heart	heart
14	chr6:165338400-165338600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:165338400-165338600	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr6:165338400-165338600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
17	chr6:165338400-165338800	Enhancers	Brain Substantia Nigra	brain
18	chr6:165338400-165338800	Enhancers	Fetal Muscle Trunk	muscle
19	chr6:165338400-165338800	Enhancers	Fetal Stomach	stomach
20	chr6:165338400-165338800	Bivalent Enhancer	Stomach Smooth Muscle	stomach
21	chr6:165338400-165339000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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