Variant report

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11175780	1.00[CHD][hapmap]
rs1122621	1.00[JPT][hapmap]
rs1122863	1.00[JPT][hapmap]
rs11564109	1.00[JPT][hapmap]
rs11564245	0.89[EUR][1000 genomes]
rs11835808	1.00[JPT][hapmap]
rs1427262	0.92[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1492329	1.00[JPT][hapmap]
rs17128391	1.00[JPT][hapmap]
rs17128401	1.00[JPT][hapmap]
rs17444306	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17444481	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17444494	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17444709	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17529964	1.00[JPT][hapmap]
rs17533153	1.00[JPT][hapmap]
rs17589334	1.00[JPT][hapmap]
rs17599001	1.00[JPT][hapmap]
rs17599042	1.00[JPT][hapmap]
rs17599666	1.00[JPT][hapmap]
rs17600388	1.00[JPT][hapmap]
rs2404834	0.83[CEU][hapmap];1.00[CHD][hapmap];0.86[MEX][hapmap];0.88[TSI][hapmap]
rs2896981	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs33962975	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4423250	1.00[CHD][hapmap];0.85[MEX][hapmap]
rs4767983	1.00[JPT][hapmap]
rs4768239	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4768246	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4768291	1.00[JPT][hapmap]
rs7309042	1.00[JPT][hapmap]
rs73094979	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73107149	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7315186	1.00[JPT][hapmap]
rs7959536	1.00[JPT][hapmap]
rs7960976	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832377	chr12:40704881-40855223	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv899032	chr12:40735939-40827479	Weak transcription ZNF genes & repeats Strong transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv558598	chr12:40742363-40828264	Strong transcription Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv899033	chr12:40758652-41122288	Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv1047639	chr12:40774370-40804386	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv558599	chr12:40790698-40814452	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:40787200-40799200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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