Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11564118	0.81[EUR][1000 genomes]
rs11564122	1.00[CEU][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11564132	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11564273	0.81[EUR][1000 genomes]
rs11564275	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12099949	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs17442665	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17442735	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17442812	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17458780	0.85[CEU][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17458836	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17458974	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17465428	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17489985	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2263418	0.81[EUR][1000 genomes]
rs2952711	1.00[EUR][1000 genomes]
rs7135678	1.00[CEU][hapmap];0.85[TSI][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7300161	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7305155	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7305994	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7959787	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv558596	chr12:40413698-40591117	Active TSS Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1044685	chr12:40574460-40771612	Enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:40586000-40591000	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr12:40586200-40591600	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr12:40589600-40592200	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr12:40590200-40592000	Enhancers	Liver	Liver
5	chr12:40590200-40595400	Weak transcription	Primary B cells from cord blood	blood
6	chr12:40590400-40595200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr12:40590400-40595600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr12:40590400-40596600	Weak transcription	Primary B cells from peripheral blood	blood

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