Variant report

Variant	rs11567743
Chromosome Location	chr5:35870276-35870277
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	PAX5	chr5:35869971-35870315	GM12878	blood:	n/a	chr5:35870188-35870206
2	CTCF	chr5:35870200-35870350	GM12873	blood:	n/a	n/a
3	PAX5	chr5:35870056-35870311	GM12878	blood:	n/a	chr5:35870188-35870206

Variant related genes	Relation type
IL7R	TF binding region

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11567711	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11567715	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11567719	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11567723	1.00[AFR][1000 genomes]
rs11567731	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11567734	0.88[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11567741	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11567742	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11567747	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6893892	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9282751	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022761	chr5:35775802-35902546	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv880517	chr5:35850693-35870814	Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv880591	chr5:35859863-35870588	Weak transcription Transcr. at gene 5' and 3' Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv471011	chr5:35861068-36003217	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv830261	chr5:35863084-36018048	Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv597815	chr5:35864590-35871684	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35860000-35876600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:35860400-35872800	Weak transcription	Spleen	Spleen
3	chr5:35860400-35883800	Weak transcription	Small Intestine	intestine
4	chr5:35861200-35870400	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr5:35862400-35870400	Weak transcription	Duodenum Mucosa	Duodenum
6	chr5:35862600-35876200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr5:35863800-35876200	Weak transcription	NHDF-Ad	bronchial
8	chr5:35864600-35876600	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr5:35866000-35873400	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr5:35866200-35878400	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr5:35866400-35872400	Genic enhancers	Primary T helper cells fromperipheralblood	blood
12	chr5:35866600-35872200	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr5:35866600-35878800	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr5:35866600-35882000	Genic enhancers	Dnd41	blood
15	chr5:35867200-35872200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr5:35867600-35878000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr5:35867800-35876400	Strong transcription	NHLF	lung
18	chr5:35867800-35879800	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr5:35868200-35871000	Genic enhancers	Fetal Thymus	thymus
20	chr5:35868200-35876000	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
21	chr5:35868400-35871000	Strong transcription	HSMM	muscle
22	chr5:35868800-35870600	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr5:35868800-35871000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr5:35869000-35870800	Enhancers	GM12878-XiMat	blood
25	chr5:35869200-35871000	Genic enhancers	Primary T cells fromperipheralblood	blood
26	chr5:35869200-35872200	Genic enhancers	Primary T helper cells PMA-I stimulated	--
27	chr5:35869200-35872400	Genic enhancers	Primary T cells from cord blood	blood
28	chr5:35869200-35873400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr5:35869200-35876600	Weak transcription	HMEC	breast
30	chr5:35869400-35870400	Enhancers	Primary hematopoietic stem cells	blood
31	chr5:35869400-35876600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr5:35869600-35870400	Enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr5:35869600-35870600	Enhancers	Primary B cells from peripheral blood	blood
34	chr5:35869600-35870800	Enhancers	Primary B cells from cord blood	blood
35	chr5:35869800-35870400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr5:35869800-35870800	Strong transcription	Thymus	Thymus
37	chr5:35869800-35875400	Weak transcription	Osteobl	bone
38	chr5:35870000-35876200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr5:35870200-35870600	Enhancers	Fetal Kidney	kidney
40	chr5:35870200-35873200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--

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