Variant report

Variant	rs11568568
Chromosome Location	chr12:21471732-21471733
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11045948	0.82[ASW][hapmap];1.00[YRI][hapmap]
rs11045969	0.82[ASW][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs11045971	1.00[YRI][hapmap]
rs11568575	1.00[AMR][1000 genomes]
rs12228765	0.82[ASW][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs12231484	1.00[YRI][hapmap]
rs2306226	0.82[ASW][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs2417974	0.82[ASW][hapmap];0.86[MKK][hapmap];1.00[YRI][hapmap]
rs3764045	1.00[YRI][hapmap]
rs4148994	0.82[ASW][hapmap];0.86[MKK][hapmap];1.00[YRI][hapmap]
rs4148995	0.82[ASW][hapmap];0.86[MKK][hapmap];1.00[YRI][hapmap]
rs4149004	1.00[YRI][hapmap]
rs58406283	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv557735	chr12:21443282-21538957	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:21416200-21473600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr12:21461000-21473800	Weak transcription	Brain Angular Gyrus	brain
3	chr12:21464800-21473400	Weak transcription	Brain Hippocampus Middle	brain
4	chr12:21471400-21472200	ZNF genes & repeats	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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