Variant report

Variant	rs11568689
Chromosome Location	chr13:95899303-95899304
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:95893721..95895916-chr13:95898093..95900583,2	K562	blood:
2	chr13:95898930..95900924-chr13:95902230..95904877,2	K562	blood:
3	chr13:95898278..95901890-chr13:95902438..95906069,3	K562	blood:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533659	chr13:95757713-96042149	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv832689	chr13:95759073-95921308	Genic enhancers ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95859000-95901000	Weak transcription	Aorta	Aorta
2	chr13:95859200-95901400	Weak transcription	Primary T cells from cord blood	blood
3	chr13:95859200-95902200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr13:95861600-95906200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr13:95879200-95907400	Weak transcription	Small Intestine	intestine
6	chr13:95879200-95914000	Weak transcription	Rectal Smooth Muscle	rectum
7	chr13:95880600-95922600	Weak transcription	Psoas Muscle	Psoas
8	chr13:95880800-95902400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr13:95881600-95904000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr13:95884200-95901200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr13:95884800-95906400	Weak transcription	Hela-S3	cervix
12	chr13:95887000-95918800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr13:95888000-95909000	Weak transcription	Fetal Stomach	stomach
14	chr13:95888400-95906800	Weak transcription	Gastric	stomach
15	chr13:95889000-95899400	Weak transcription	HUVEC	blood vessel
16	chr13:95890000-95907600	Weak transcription	Colon Smooth Muscle	Colon
17	chr13:95890800-95906400	Weak transcription	Osteobl	bone
18	chr13:95891800-95908000	Weak transcription	Esophagus	oesophagus
19	chr13:95892600-95905400	Weak transcription	Primary B cells from peripheral blood	blood
20	chr13:95893000-95905400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr13:95893600-95899400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr13:95894000-95899400	Weak transcription	Brain Hippocampus Middle	brain
23	chr13:95894000-95899600	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr13:95895000-95900000	Enhancers	Primary hematopoietic stem cells	blood
25	chr13:95895400-95900000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr13:95895400-95900000	Strong transcription	NHLF	lung
27	chr13:95895600-95899800	Weak transcription	Spleen	Spleen
28	chr13:95895800-95899400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr13:95896000-95902000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr13:95896200-95923400	Weak transcription	Ovary	ovary
31	chr13:95897000-95900400	Genic enhancers	GM12878-XiMat	blood
32	chr13:95897000-95927400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr13:95897200-95900000	Genic enhancers	Lung	lung
34	chr13:95897400-95900000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr13:95897400-95900000	Strong transcription	Skeletal Muscle Male	skeletal muscle
36	chr13:95897400-95900600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr13:95897600-95899400	Enhancers	Duodenum Mucosa	Duodenum
38	chr13:95897600-95901200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr13:95897800-95899600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr13:95897800-95900600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr13:95898200-95899600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr13:95898200-95899600	Strong transcription	HSMMtube	muscle
43	chr13:95898200-95899800	Enhancers	Rectal Mucosa Donor 29	rectum
44	chr13:95898200-95900000	Strong transcription	Primary T helper cells fromperipheralblood	blood
45	chr13:95898200-95900000	Enhancers	Rectal Mucosa Donor 31	rectum
46	chr13:95898200-95900000	Strong transcription	NHDF-Ad	bronchial
47	chr13:95898200-95900200	Genic enhancers	K562	blood
48	chr13:95898400-95899400	Enhancers	HepG2	liver
49	chr13:95898600-95899400	Enhancers	Primary hematopoietic stem cells short term culture	blood
50	chr13:95898600-95899600	Strong transcription	Primary T cells fromperipheralblood	blood

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