Variant report

Variant	rs11568690
Chromosome Location	chr13:95735582-95735583
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:95733801..95735759-chr13:95738839..95740442,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12875609	0.95[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs16950526	0.86[YRI][hapmap]
rs16950531	0.95[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs16950533	0.95[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs16950584	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1751033	1.00[YRI][hapmap]
rs7994050	1.00[MEX][hapmap]
rs7996584	0.86[ASW][hapmap];0.95[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs7997756	0.95[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs9302045	1.00[MEX][hapmap]
rs931112	0.95[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs9590171	1.00[MEX][hapmap]
rs9590192	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832688	chr13:95633193-95780198	Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv525194	chr13:95672950-95737192	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95669600-95744000	Weak transcription	Small Intestine	intestine
2	chr13:95676000-95740000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr13:95683200-95751800	Weak transcription	Fetal Lung	lung
4	chr13:95686800-95744600	Weak transcription	Esophagus	oesophagus
5	chr13:95692800-95735800	Weak transcription	NHEK	skin
6	chr13:95710400-95741200	Weak transcription	Right Ventricle	heart
7	chr13:95718000-95741800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr13:95719600-95739800	Weak transcription	Pancreas	Pancrea
9	chr13:95720000-95736200	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr13:95720600-95736600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr13:95723000-95742200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr13:95723800-95760000	Weak transcription	Colon Smooth Muscle	Colon
13	chr13:95724000-95740000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr13:95724000-95751800	Weak transcription	Rectal Smooth Muscle	rectum
15	chr13:95724000-95760600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr13:95724200-95740000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr13:95724200-95749600	Weak transcription	Fetal Intestine Large	intestine
18	chr13:95726400-95739800	Weak transcription	NH-A	brain
19	chr13:95727000-95739800	Weak transcription	NHLF	lung
20	chr13:95727000-95752600	Weak transcription	HSMM	muscle
21	chr13:95727000-95791600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr13:95727000-95812000	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr13:95727200-95740000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr13:95727400-95736000	Weak transcription	NHDF-Ad	bronchial
25	chr13:95727600-95761000	Weak transcription	K562	blood
26	chr13:95727800-95744200	Weak transcription	Spleen	Spleen
27	chr13:95727800-95767800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr13:95728400-95778800	Weak transcription	Ovary	ovary
29	chr13:95728600-95744200	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr13:95728600-95776000	Weak transcription	Gastric	stomach
31	chr13:95730800-95740000	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr13:95731200-95791600	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr13:95731600-95756000	Weak transcription	Stomach Smooth Muscle	stomach
34	chr13:95731600-95756600	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr13:95732000-95739800	Weak transcription	GM12878-XiMat	blood
36	chr13:95732800-95751800	Weak transcription	Primary T cells from cord blood	blood
37	chr13:95733000-95736000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr13:95733600-95736600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr13:95733600-95750000	Weak transcription	Lung	lung
40	chr13:95733800-95737400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr13:95733800-95742000	Weak transcription	Aorta	Aorta
42	chr13:95733800-95750000	Weak transcription	Fetal Intestine Small	intestine
43	chr13:95733800-95751600	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr13:95734000-95736200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr13:95734000-95737800	Weak transcription	A549	lung
46	chr13:95734800-95736600	Enhancers	Primary hematopoietic stem cells short term culture	blood
47	chr13:95734800-95737400	Enhancers	Primary hematopoietic stem cells	blood
48	chr13:95735000-95737400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr13:95735200-95736600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr13:95735400-95738000	Enhancers	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links