Variant report

Variant	rs1156876
Chromosome Location	chr5:113400143-113400144
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10041702	1.00[ASN][1000 genomes]
rs1038584	1.00[ASN][1000 genomes]
rs2416362	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2632142	1.00[ASN][1000 genomes]
rs2632143	1.00[ASN][1000 genomes]
rs2721317	1.00[ASN][1000 genomes]
rs7703847	1.00[JPT][hapmap]
rs7703859	1.00[JPT][hapmap]
rs901581	1.00[ASN][1000 genomes]
rs901583	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471042	chr5:113160490-113440892	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113395800-113400600	Weak transcription	Fetal Heart	heart
2	chr5:113396200-113400600	Weak transcription	Right Atrium	heart
3	chr5:113397600-113404200	Weak transcription	Pancreas	Pancrea
4	chr5:113398800-113400200	Enhancers	Fetal Muscle Leg	muscle
5	chr5:113399000-113406200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:113399200-113400200	Enhancers	Psoas Muscle	Psoas
7	chr5:113399200-113405600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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