Variant report

Variant	rs11568858
Chromosome Location	chr4:110835304-110835305
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530156	chr4:110721397-110911297	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	esv3368651	chr4:110835039-110835545	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110832800-110836200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr4:110833400-110835600	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr4:110833600-110835400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr4:110833600-110836000	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr4:110833600-110838000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr4:110833800-110835800	Enhancers	H1 Cell Line	embryonic stem cell
7	chr4:110833800-110835800	Active TSS	Right Ventricle	heart
8	chr4:110833800-110836000	Active TSS	Left Ventricle	heart
9	chr4:110833800-110836000	Active TSS	Rectal Mucosa Donor 29	rectum
10	chr4:110833800-110836400	Enhancers	Placenta Amnion	Placenta Amnion
11	chr4:110833800-110836400	Active TSS	Right Atrium	heart
12	chr4:110833800-110836400	Active TSS	HSMMtube	muscle
13	chr4:110833800-110837600	Active TSS	Skeletal Muscle Male	skeletal muscle
14	chr4:110834000-110835400	Active TSS	Fetal Intestine Small	intestine
15	chr4:110834000-110835800	Active TSS	Pancreatic Islets	Pancreatic Islet
16	chr4:110834000-110837200	Active TSS	Pancreas	Pancrea
17	chr4:110834000-110837400	Active TSS	Psoas Muscle	Psoas
18	chr4:110834000-110838400	Active TSS	Skeletal Muscle Female	skeletal muscle
19	chr4:110834200-110835400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr4:110834200-110835800	Active TSS	Fetal Intestine Large	intestine
21	chr4:110834200-110836600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr4:110834200-110837000	Active TSS	Fetal Muscle Trunk	muscle
23	chr4:110834200-110837200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr4:110834400-110835400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr4:110834400-110844800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr4:110834600-110835400	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr4:110834600-110835600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr4:110834600-110835800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr4:110834600-110836400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr4:110834600-110836400	Weak transcription	A549	lung
31	chr4:110834600-110836600	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr4:110834600-110837200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr4:110834600-110841800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr4:110834800-110835400	Enhancers	K562	blood
35	chr4:110834800-110835600	Active TSS	iPS-20b Cell Line	embryonic stem cell
36	chr4:110834800-110835800	Active TSS	HUES6 Cell Line	embryonic stem cell
37	chr4:110834800-110835800	Flanking Active TSS	Fetal Heart	heart
38	chr4:110834800-110837400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr4:110835000-110835400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr4:110835000-110835600	Enhancers	ES-I3 Cell Line	embryonic stem cell
41	chr4:110835000-110835600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr4:110835200-110835400	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
43	chr4:110835200-110835400	Flanking Active TSS	Primary hematopoietic stem cells	blood
44	chr4:110835200-110835400	Active TSS	Colonic Mucosa	Colon
45	chr4:110835200-110835600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr4:110835200-110835600	Active TSS	Duodenum Mucosa	Duodenum
47	chr4:110835200-110835600	Enhancers	Fetal Muscle Leg	muscle
48	chr4:110835200-110842200	Weak transcription	HUES48 Cell Line	embryonic stem cell

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