Variant report

Variant	rs11569265
Chromosome Location	chr3:141681218-141681219
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:141677833..141681562-chr3:141940818..141944357,3	MCF-7	breast:
2	chr3:141681139..141681888-chr3:141844783..141845445,2	MCF-7	breast:
3	chr3:141679111..141682072-chr3:141685599..141688176,2	K562	blood:
4	chr3:141681127..141682067-chr3:141998956..141999598,2	MCF-7	breast:
5	chr3:141681128..141682035-chr3:141717271..141718146,5	MCF-7	breast:
6	chr3:141681160..141682062-chr3:141998578..141999511,3	K562	blood:
7	chr3:141681155..141682217-chr3:141870930..141871455,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000114126	Chromatin interaction
ENSG00000175066	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11569260	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11569277	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2861420	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7612323	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv1013352	chr3:141541105-141870293	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141629000-141739200	Weak transcription	Psoas Muscle	Psoas
2	chr3:141634200-141682000	Weak transcription	Brain Angular Gyrus	brain
3	chr3:141659200-141696200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr3:141660600-141698200	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr3:141666000-141697600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr3:141666400-141687200	Strong transcription	Dnd41	blood
7	chr3:141667000-141685600	Weak transcription	Brain Substantia Nigra	brain
8	chr3:141668000-141686600	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr3:141668600-141688600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr3:141669600-141696800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr3:141670000-141683600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr3:141670000-141684000	Weak transcription	Colonic Mucosa	Colon
13	chr3:141671600-141697400	Weak transcription	Gastric	stomach
14	chr3:141671800-141681600	Weak transcription	Brain Cingulate Gyrus	brain
15	chr3:141671800-141681800	Weak transcription	Primary B cells from peripheral blood	blood
16	chr3:141671800-141682200	Weak transcription	Pancreas	Pancrea
17	chr3:141671800-141682400	Weak transcription	Lung	lung
18	chr3:141671800-141686400	Weak transcription	HepG2	liver
19	chr3:141671800-141691200	Weak transcription	Spleen	Spleen
20	chr3:141671800-141719000	Weak transcription	Placenta	Placenta
21	chr3:141671800-141724000	Weak transcription	Right Ventricle	heart
22	chr3:141671800-141735600	Weak transcription	Aorta	Aorta
23	chr3:141672000-141697000	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr3:141672000-141700000	Weak transcription	Small Intestine	intestine
25	chr3:141672400-141681600	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr3:141672400-141688600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr3:141674400-141682000	Weak transcription	Brain Hippocampus Middle	brain
28	chr3:141674400-141682200	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr3:141674400-141688000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr3:141674400-141690200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr3:141674400-141708000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr3:141674600-141700400	Weak transcription	Esophagus	oesophagus
33	chr3:141674600-141712600	Weak transcription	Fetal Brain Male	brain
34	chr3:141675200-141684800	Strong transcription	Fetal Intestine Small	intestine
35	chr3:141675400-141683800	Strong transcription	H1 Cell Line	embryonic stem cell
36	chr3:141675400-141684800	Strong transcription	Primary hematopoietic stem cells	blood
37	chr3:141675400-141687000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr3:141675400-141687200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr3:141675600-141683800	Strong transcription	Fetal Muscle Trunk	muscle
40	chr3:141675600-141687200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr3:141675600-141687200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
42	chr3:141675600-141687200	Strong transcription	Thymus	Thymus
43	chr3:141675800-141683800	Strong transcription	Fetal Intestine Large	intestine
44	chr3:141675800-141687200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr3:141676000-141683000	Strong transcription	HUES64 Cell Line	embryonic stem cell
46	chr3:141676000-141683200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
47	chr3:141676000-141683400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr3:141676000-141687000	Strong transcription	HUES48 Cell Line	embryonic stem cell
49	chr3:141676000-141687000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
50	chr3:141676000-141687000	Strong transcription	Fetal Thymus	thymus

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