Variant report

Variant	rs11570576
Chromosome Location	chr17:45197723-45197724
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11570505	1.00[AFR][1000 genomes]
rs11570522	0.81[AFR][1000 genomes]
rs11570530	1.00[AFR][1000 genomes]
rs11570578	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833466	chr17:45020360-45204537	Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv1062983	chr17:45030095-45789543	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
3	nsv833467	chr17:45063935-45252624	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv3332795	chr17:45116212-45209297	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	esv3386521	chr17:45116232-45209267	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	nsv1059766	chr17:45130765-45203468	Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
7	esv2760450	chr17:45130777-45225222	Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
8	nsv908563	chr17:45158537-45230311	ZNF genes & repeats Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
9	nsv962456	chr17:45163689-45212872	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:45185600-45206400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr17:45186800-45197800	Weak transcription	Fetal Brain Female	brain
3	chr17:45188200-45197800	Weak transcription	Hela-S3	cervix
4	chr17:45189800-45198000	Weak transcription	Fetal Stomach	stomach
5	chr17:45190000-45203200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr17:45191000-45202000	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr17:45191200-45197800	Weak transcription	Small Intestine	intestine
8	chr17:45191200-45202600	Weak transcription	Right Ventricle	heart
9	chr17:45191800-45198000	Weak transcription	Thymus	Thymus
10	chr17:45192000-45198200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr17:45192200-45198000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr17:45192200-45198000	Weak transcription	Left Ventricle	heart
13	chr17:45192400-45212800	Weak transcription	Gastric	stomach
14	chr17:45192600-45200200	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr17:45193200-45197800	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr17:45193200-45212800	Weak transcription	Aorta	Aorta
17	chr17:45194000-45209800	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr17:45194200-45204600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr17:45194200-45208200	Strong transcription	HUVEC	blood vessel
20	chr17:45194200-45209600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr17:45194200-45209600	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr17:45194200-45209800	Strong transcription	Dnd41	blood
23	chr17:45194400-45201000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr17:45194800-45198000	Weak transcription	Fetal Muscle Leg	muscle
25	chr17:45194800-45198800	Weak transcription	Fetal Intestine Small	intestine
26	chr17:45194800-45203600	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr17:45194800-45212800	Weak transcription	Colonic Mucosa	Colon
28	chr17:45194800-45214400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr17:45194800-45234200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr17:45195000-45197800	Weak transcription	Brain Substantia Nigra	brain
31	chr17:45195400-45199000	Strong transcription	Primary hematopoietic stem cells	blood
32	chr17:45195400-45201200	Strong transcription	Liver	Liver
33	chr17:45195400-45209600	Strong transcription	Primary neutrophils fromperipheralblood	blood
34	chr17:45195400-45209800	Strong transcription	Fetal Thymus	thymus
35	chr17:45195600-45197800	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr17:45195600-45203200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr17:45195600-45209400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr17:45195800-45201600	Strong transcription	Adipose Nuclei	Adipose
39	chr17:45195800-45212800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr17:45196000-45199200	Strong transcription	K562	blood
41	chr17:45196000-45201400	Strong transcription	Fetal Muscle Trunk	muscle
42	chr17:45196000-45205600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr17:45196000-45206400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr17:45196000-45209600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr17:45196000-45209800	Strong transcription	Primary T helper cells fromperipheralblood	blood
46	chr17:45196200-45212800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr17:45196400-45198000	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr17:45196400-45204200	Weak transcription	Lung	lung
49	chr17:45196400-45204200	Weak transcription	Spleen	Spleen
50	chr17:45196400-45212800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links