Variant report

Variant	rs11571144
Chromosome Location	chr11:100999443-100999444
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:100817953..100820202-chr11:100996592..100999547,2	MCF-7	breast:
2	chr11:100989846..100992410-chr11:100997407..100999577,3	K562	blood:
3	chr11:100862479..100864275-chr11:100997401..100999595,2	MCF-7	breast:
4	chr11:100933625..100935266-chr11:100997720..101000555,2	MCF-7	breast:
5	chr11:100997950..100999651-chr11:101197164..101199921,2	MCF-7	breast:
6	chr11:100906950..100909158-chr11:100997718..100999682,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000170647	Chromatin interaction
ENSG00000082175	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11571149	1.00[MEX][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv898328	chr11:100993846-101009933	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100996600-101000600	Active TSS	Aorta	Aorta
2	chr11:100996600-101000600	Active TSS	K562	blood
3	chr11:100996600-101000800	Active TSS	Ovary	ovary
4	chr11:100996600-101001200	Active TSS	Pancreatic Islets	Pancreatic Islet
5	chr11:100996800-101000800	Active TSS	Colon Smooth Muscle	Colon
6	chr11:100997000-100999800	Bivalent/Poised TSS	Fetal Lung	lung
7	chr11:100997200-101000600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
8	chr11:100997200-101000600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
9	chr11:100997400-101000600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
10	chr11:100997400-101000600	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
11	chr11:100997400-101000600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
12	chr11:100997600-100999600	Bivalent/Poised TSS	Esophagus	oesophagus
13	chr11:100997600-100999800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr11:100997600-100999800	Bivalent/Poised TSS	Brain Substantia Nigra	brain
15	chr11:100997600-100999800	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
16	chr11:100997600-101000600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
17	chr11:100997600-101000600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
18	chr11:100997600-101000600	Active TSS	Left Ventricle	heart
19	chr11:100997600-101000600	Bivalent/Poised TSS	Psoas Muscle	Psoas
20	chr11:100997600-101000600	Bivalent/Poised TSS	Rectal Mucosa Donor 31	rectum
21	chr11:100997600-101000800	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr11:100997800-101000600	Bivalent/Poised TSS	Brain Angular Gyrus	brain
23	chr11:100997800-101000600	Bivalent Enhancer	Fetal Brain Male	brain
24	chr11:100998000-101000400	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr11:100998400-100999600	Flanking Bivalent TSS/Enh	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr11:100998400-101000200	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr11:100998400-101000400	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
28	chr11:100998400-101000400	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
29	chr11:100998600-100999600	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
30	chr11:100998600-100999800	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
31	chr11:100998800-100999600	Bivalent Enhancer	NHEK	skin
32	chr11:100998800-101000400	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
33	chr11:100998800-101000600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
34	chr11:100998800-101000600	Bivalent/Poised TSS	Brain Anterior Caudate	brain
35	chr11:100998800-101000600	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
36	chr11:100998800-101000800	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
37	chr11:100998800-101000800	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
38	chr11:100999000-100999600	Flanking Active TSS	Gastric	stomach
39	chr11:100999000-100999600	Flanking Bivalent TSS/Enh	Lung	lung
40	chr11:100999000-100999800	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
41	chr11:100999000-101000000	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
42	chr11:100999000-101000000	Bivalent Enhancer	Stomach Mucosa	stomach
43	chr11:100999000-101000200	Bivalent Enhancer	NH-A	brain
44	chr11:100999000-101000600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr11:100999200-100999600	Bivalent Enhancer	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr11:100999200-100999600	Bivalent/Poised TSS	Primary hematopoietic stem cells	blood
47	chr11:100999200-100999600	Bivalent/Poised TSS	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr11:100999200-100999600	Bivalent Enhancer	Liver	Liver
49	chr11:100999200-100999600	Flanking Bivalent TSS/Enh	Brain Dorsolateral Prefrontal Cortex	brain
50	chr11:100999200-100999600	Bivalent Enhancer	Placenta Amnion	Placenta Amnion

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