Variant report

Variant	rs11571196
Chromosome Location	chr11:100949471-100949472
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:100948856..100949860-chr11:101206555..101207879,10	MCF-7	breast:
2	chr11:100949085..100949664-chr11:101206913..101207439,2	MCF-7	breast:
3	chr11:100949071..100949678-chr11:101169853..101170771,2	MCF-7	breast:
4	chr11:100949048..100949717-chr11:101049098..101049659,2	MCF-7	breast:
5	chr11:100948922..100949526-chr11:101312204..101312930,2	MCF-7	breast:
6	chr11:100903136..100906539-chr11:100946907..100951468,5	MCF-7	breast:
7	chr11:100948988..100949571-chr11:101169795..101170771,2	MCF-7	breast:
8	chr11:100949048..100949717-chr11:101049059..101049659,3	MCF-7	breast:
9	chr11:100948856..100949840-chr11:101206730..101207879,3	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11571167	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11571168	1.00[AMR][1000 genomes]
rs11571172	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs11571195	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11571198	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35370108	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100905400-100997600	Weak transcription	Left Ventricle	heart
2	chr11:100931400-100950400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr11:100937400-100953800	Weak transcription	Aorta	Aorta
4	chr11:100947000-100950600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr11:100948600-100950400	Weak transcription	Ovary	ovary

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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