Variant report

Variant	rs11571247
Chromosome Location	chr11:100919066-100919067
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11571215	1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MKK][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11571250	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11571258	1.00[ASN][1000 genomes]
rs2124761	1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs61351396	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs936268	1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100905200-100935800	Weak transcription	Colon Smooth Muscle	Colon
2	chr11:100905400-100920000	Weak transcription	Fetal Lung	lung
3	chr11:100905400-100997600	Weak transcription	Left Ventricle	heart
4	chr11:100914400-100935600	Weak transcription	Aorta	Aorta
5	chr11:100918400-100919200	Enhancers	Placenta Amnion	Placenta Amnion
6	chr11:100918400-100920600	Weak transcription	Adipose Nuclei	Adipose
7	chr11:100918600-100919800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr11:100918600-100920800	Enhancers	K562	blood
9	chr11:100918800-100930800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr11:100919000-100920800	Strong transcription	Ovary	ovary

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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