Variant report

Variant	rs11571904
Chromosome Location	chr6:44357193-44357194
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:44355391..44357263-chr6:44358949..44363275,4	MCF-7	breast:
2	chr6:44307682..44310665-chr6:44355077..44358723,3	K562	blood:
3	chr6:44356556..44360481-chr6:44380097..44385414,6	K562	blood:
4	chr6:44231894..44233697-chr6:44355459..44357460,2	K562	blood:
5	chr6:44356394..44359367-chr6:44380277..44384190,3	K562	blood:
6	chr6:44233082..44237547-chr6:44353791..44357282,5	MCF-7	breast:
7	chr6:44356285..44358292-chr6:44361831..44365473,3	K562	blood:
8	chr6:44088681..44090812-chr6:44355955..44357719,2	K562	blood:
9	chr6:44275712..44278535-chr6:44356876..44358602,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000146232	Chromatin interaction
ENSG00000249481	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs3188	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019145	chr6:44313576-44421440	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44354400-44357200	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr6:44354400-44357200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
3	chr6:44354400-44357400	Active TSS	HUES64 Cell Line	embryonic stem cell
4	chr6:44354600-44357200	Active TSS	HUES48 Cell Line	embryonic stem cell
5	chr6:44354600-44357200	Active TSS	Ovary	ovary
6	chr6:44354600-44357200	Active TSS	Right Atrium	heart
7	chr6:44356000-44357200	Flanking Active TSS	Primary B cells from cord blood	blood
8	chr6:44356000-44357200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
9	chr6:44356000-44357200	Flanking Active TSS	Brain Cingulate Gyrus	brain
10	chr6:44356000-44357200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
11	chr6:44356000-44357200	Flanking Active TSS	NH-A	brain
12	chr6:44356000-44357400	Flanking Active TSS	Primary hematopoietic stem cells	blood
13	chr6:44356000-44357400	Flanking Active TSS	Liver	Liver
14	chr6:44356000-44357400	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
15	chr6:44356000-44357400	Flanking Active TSS	Fetal Stomach	stomach
16	chr6:44356000-44357400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
17	chr6:44356000-44357800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr6:44356000-44358400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr6:44356200-44357200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
20	chr6:44356200-44357200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr6:44356200-44357200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr6:44356200-44357200	Flanking Active TSS	Brain Angular Gyrus	brain
23	chr6:44356200-44357200	Flanking Active TSS	Duodenum Mucosa	Duodenum
24	chr6:44356200-44357200	Flanking Active TSS	Fetal Lung	lung
25	chr6:44356200-44357200	Flanking Active TSS	Dnd41	blood
26	chr6:44356200-44357200	Flanking Active TSS	NHEK	skin
27	chr6:44356200-44357400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
28	chr6:44356200-44357400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr6:44356200-44357400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr6:44356200-44357400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr6:44356200-44357400	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
32	chr6:44356200-44357400	Enhancers	Esophagus	oesophagus
33	chr6:44356200-44357400	Flanking Active TSS	Rectal Smooth Muscle	rectum
34	chr6:44356200-44357400	Flanking Active TSS	Thymus	Thymus
35	chr6:44356200-44357600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
36	chr6:44356200-44357600	Enhancers	Gastric	stomach
37	chr6:44356200-44357600	Flanking Active TSS	Hela-S3	cervix
38	chr6:44356200-44357800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr6:44356200-44357800	Enhancers	Spleen	Spleen
40	chr6:44356200-44359200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr6:44356400-44357200	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr6:44356400-44357200	Enhancers	Colonic Mucosa	Colon
43	chr6:44356400-44357200	Enhancers	Placenta	Placenta
44	chr6:44356400-44357200	Enhancers	Stomach Mucosa	stomach
45	chr6:44356400-44357400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr6:44356400-44357400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
47	chr6:44356400-44357400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
48	chr6:44356400-44357400	Flanking Active TSS	Brain Hippocampus Middle	brain
49	chr6:44356400-44357400	Enhancers	Left Ventricle	heart
50	chr6:44356400-44357400	Enhancers	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links