Variant report

Variant	rs1157217
Chromosome Location	chr6:66099219-66099220
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs9342472	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9345616	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9345617	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9345621	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9345623	0.82[AMR][1000 genomes]
rs9354235	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9453298	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886011	chr6:65873577-66237309	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv886012	chr6:65905998-66354809	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv933487	chr6:65947165-66134134	Flanking Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv886016	chr6:66002389-66103595	Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv886019	chr6:66009103-66103595	Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	esv3447152	chr6:66027938-66253181	Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv886021	chr6:66030650-66192399	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
8	nsv886023	chr6:66039601-66103595	Enhancers	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
9	nsv886024	chr6:66039601-66201364	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
10	nsv886025	chr6:66050797-66192399	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv462981	chr6:66052294-66115654	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv603436	chr6:66052294-66115654	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv462982	chr6:66052294-66122359	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv603437	chr6:66052294-66122359	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv1015632	chr6:66056747-66114121	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv1032301	chr6:66079541-66175631	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv462983	chr6:66091351-66125723	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv603438	chr6:66091351-66125723	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv886026	chr6:66091351-66130870	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv970376	chr6:66097122-66110345	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:66099200-66099600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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