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Variant report
Variant
rs11572538
Chromosome Location
chr1:217049091-217049092
allele
C/T
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:0)
CpG islands (count:0)
Chromatin interactive region (count:0)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
No data
No data
No data
No data
No data
No data
No data
Extended variants information (count: 5 )
Associated traits (count: 1 )
rSNPs within LD-proxies of this variant (count:5)
rs_ID
r
2
[population]
rs12086610
1.00[GIH][hapmap]
rs1865919
1.00[AMR][1000 genomes]
rs58216099
1.00[AMR][1000 genomes]
rs59340162
1.00[AMR][1000 genomes]
rs61125610
1.00[AMR][1000 genomes]
mRNA abundance (count:1)
SNP
Gene
Cis/trans
Tissue
Source
rs11572538
PRRX1
trans
lymphoblastoid
seeQTL
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links