Variant report

Variant	rs11572623
Chromosome Location	chr1:216950764-216950765
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11572665	1.00[AMR][1000 genomes]
rs11572721	1.00[AMR][1000 genomes]
rs11572725	1.00[AMR][1000 genomes]
rs1339213	1.00[YRI][hapmap]
rs1416610	1.00[AMR][1000 genomes]
rs1498275	1.00[MEX][hapmap]
rs17042975	1.00[MEX][hapmap]
rs17043114	1.00[AMR][1000 genomes]
rs17043326	1.00[AMR][1000 genomes]
rs17043741	1.00[AMR][1000 genomes]
rs17043745	1.00[AMR][1000 genomes]
rs951292	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762162	chr1:216942781-216966140	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv947380	chr1:216946923-216954429	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216897400-216958600	Weak transcription	Pancreas	Pancrea
2	chr1:216939800-216958600	Weak transcription	Psoas Muscle	Psoas
3	chr1:216941400-216951400	Weak transcription	Fetal Intestine Small	intestine
4	chr1:216944000-216951600	Weak transcription	Aorta	Aorta
5	chr1:216950400-216953000	Weak transcription	Fetal Heart	heart
6	chr1:216950600-216950800	Enhancers	Fetal Lung	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links