Variant report

Variant	rs11572806
Chromosome Location	chr1:216702811-216702812
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11572698	1.00[JPT][hapmap]
rs17599209	1.00[EUR][1000 genomes]
rs6670052	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv549199	chr1:216384908-216814702	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv1003815	chr1:216504235-216836498	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv535289	chr1:216504235-216836498	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv1008939	chr1:216688284-216712570	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216673200-216704600	Weak transcription	Pancreas	Pancrea
2	chr1:216680600-216704600	Weak transcription	Left Ventricle	heart
3	chr1:216692600-216705200	Weak transcription	Placenta	Placenta
4	chr1:216697400-216704000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr1:216697400-216704600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr1:216697400-216704600	Weak transcription	Fetal Heart	heart
7	chr1:216697600-216704400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr1:216697800-216704400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr1:216698000-216704000	Enhancers	Primary B cells from peripheral blood	blood
10	chr1:216698400-216703600	Weak transcription	Fetal Lung	lung
11	chr1:216699600-216704400	Weak transcription	Fetal Kidney	kidney
12	chr1:216701200-216704800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr1:216701400-216704600	Weak transcription	Gastric	stomach
14	chr1:216701600-216704200	Enhancers	Primary B cells from cord blood	blood
15	chr1:216702000-216703000	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr1:216702000-216703000	Enhancers	Fetal Intestine Small	intestine
17	chr1:216702400-216703000	Enhancers	GM12878-XiMat	blood
18	chr1:216702400-216703400	Weak transcription	Liver	Liver
19	chr1:216702400-216703600	Weak transcription	Stomach Mucosa	stomach
20	chr1:216702400-216704200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr1:216702400-216704600	Weak transcription	Fetal Intestine Large	intestine
22	chr1:216702600-216704400	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr1:216702600-216704400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr1:216702600-216704600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr1:216702600-216704600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr1:216702800-216704200	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr1:216702800-216704400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr1:216702800-216704600	Weak transcription	HUES64 Cell Line	embryonic stem cell

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