Variant report

Variant	rs11573104
Chromosome Location	chr4:57910527-57910528
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11573106	0.81[CHB][hapmap];0.80[GIH][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs11933954	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11937978	0.80[YRI][hapmap]
rs11947401	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.96[TSI][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1277273	0.82[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs6852762	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9999347	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868815	chr4:57114268-58084688	Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:57898800-57917800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr4:57899200-57914600	Weak transcription	Brain Substantia Nigra	brain
3	chr4:57899400-57925000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr4:57899600-57913000	Weak transcription	Fetal Intestine Small	intestine
5	chr4:57899600-57942200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr4:57904800-57912200	Weak transcription	Brain Angular Gyrus	brain
7	chr4:57904800-57922200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr4:57906600-57911600	Enhancers	Ovary	ovary
9	chr4:57906800-57911600	Enhancers	Fetal Muscle Leg	muscle
10	chr4:57907000-57911200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr4:57907000-57914800	Weak transcription	Fetal Heart	heart
12	chr4:57907200-57913400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr4:57907400-57916600	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr4:57907800-57911200	Enhancers	Left Ventricle	heart
15	chr4:57908000-57911400	Enhancers	Fetal Lung	lung
16	chr4:57908000-57912600	Enhancers	NHDF-Ad	bronchial
17	chr4:57908000-57913000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr4:57908000-57914200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr4:57908200-57910600	Enhancers	Right Atrium	heart
20	chr4:57908200-57911000	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr4:57908200-57913000	Enhancers	NHLF	lung
22	chr4:57908400-57913000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr4:57908400-57913000	Enhancers	Fetal Stomach	stomach
24	chr4:57908600-57911600	Enhancers	HUVEC	blood vessel
25	chr4:57908600-57911600	Enhancers	NH-A	brain
26	chr4:57908800-57910800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr4:57908800-57911000	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr4:57908800-57911000	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr4:57908800-57913000	Enhancers	Colon Smooth Muscle	Colon
30	chr4:57909000-57912800	Enhancers	Osteobl	bone
31	chr4:57909200-57910600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr4:57909200-57910600	Enhancers	Psoas Muscle	Psoas
33	chr4:57909200-57910600	Enhancers	Right Ventricle	heart
34	chr4:57909200-57911400	Enhancers	A549	lung
35	chr4:57909200-57912000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr4:57909200-57912400	Enhancers	HSMM	muscle
37	chr4:57909400-57910600	Enhancers	Primary hematopoietic stem cells short term culture	blood
38	chr4:57909400-57911400	Enhancers	Fetal Kidney	kidney
39	chr4:57909400-57911800	Enhancers	Muscle Satellite Cultured Cells	--
40	chr4:57909600-57910600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr4:57909600-57913600	Enhancers	HSMMtube	muscle
42	chr4:57909800-57911400	Enhancers	Brain Anterior Caudate	brain
43	chr4:57909800-57912000	Enhancers	Aorta	Aorta
44	chr4:57909800-57912000	Enhancers	HMEC	breast
45	chr4:57910000-57910600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr4:57910000-57910600	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr4:57910000-57912800	Enhancers	Duodenum Smooth Muscle	Duodenum
48	chr4:57910200-57910600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr4:57910200-57910800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr4:57910200-57911400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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