Variant report

Variant	rs11573105
Chromosome Location	chr4:57910319-57910320
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF7L2	chr4:57909830-57910480	HCT-116	colon:	n/a	chr4:57910172-57910181 chr4:57910091-57910100

Variant related genes	Relation type
IGFBP7	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10012869	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11133474	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs11573106	0.83[AFR][1000 genomes]
rs11573112	1.00[AMR][1000 genomes]
rs11573113	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2276896	1.00[CHB][hapmap]
rs3755904	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868815	chr4:57114268-58084688	Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:57898800-57917800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr4:57899200-57914600	Weak transcription	Brain Substantia Nigra	brain
3	chr4:57899400-57925000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr4:57899600-57913000	Weak transcription	Fetal Intestine Small	intestine
5	chr4:57899600-57942200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr4:57904800-57912200	Weak transcription	Brain Angular Gyrus	brain
7	chr4:57904800-57922200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr4:57906600-57911600	Enhancers	Ovary	ovary
9	chr4:57906800-57910400	Strong transcription	NHEK	skin
10	chr4:57906800-57911600	Enhancers	Fetal Muscle Leg	muscle
11	chr4:57907000-57911200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr4:57907000-57914800	Weak transcription	Fetal Heart	heart
13	chr4:57907200-57913400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr4:57907400-57916600	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr4:57907800-57911200	Enhancers	Left Ventricle	heart
16	chr4:57908000-57910400	Enhancers	Fetal Muscle Trunk	muscle
17	chr4:57908000-57911400	Enhancers	Fetal Lung	lung
18	chr4:57908000-57912600	Enhancers	NHDF-Ad	bronchial
19	chr4:57908000-57913000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr4:57908000-57914200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr4:57908200-57910400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr4:57908200-57910600	Enhancers	Right Atrium	heart
23	chr4:57908200-57911000	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr4:57908200-57913000	Enhancers	NHLF	lung
25	chr4:57908400-57913000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr4:57908400-57913000	Enhancers	Fetal Stomach	stomach
27	chr4:57908600-57911600	Enhancers	HUVEC	blood vessel
28	chr4:57908600-57911600	Enhancers	NH-A	brain
29	chr4:57908800-57910400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr4:57908800-57910400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr4:57908800-57910800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr4:57908800-57911000	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr4:57908800-57911000	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr4:57908800-57913000	Enhancers	Colon Smooth Muscle	Colon
35	chr4:57909000-57912800	Enhancers	Osteobl	bone
36	chr4:57909200-57910400	Enhancers	Rectal Smooth Muscle	rectum
37	chr4:57909200-57910600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr4:57909200-57910600	Enhancers	Psoas Muscle	Psoas
39	chr4:57909200-57910600	Enhancers	Right Ventricle	heart
40	chr4:57909200-57911400	Enhancers	A549	lung
41	chr4:57909200-57912000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr4:57909200-57912400	Enhancers	HSMM	muscle
43	chr4:57909400-57910600	Enhancers	Primary hematopoietic stem cells short term culture	blood
44	chr4:57909400-57911400	Enhancers	Fetal Kidney	kidney
45	chr4:57909400-57911800	Enhancers	Muscle Satellite Cultured Cells	--
46	chr4:57909600-57910600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr4:57909600-57913600	Enhancers	HSMMtube	muscle
48	chr4:57909800-57910400	Enhancers	Sigmoid Colon	Sigmoid Colon
49	chr4:57909800-57911400	Enhancers	Brain Anterior Caudate	brain
50	chr4:57909800-57912000	Enhancers	Aorta	Aorta

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