Variant report

Variant	rs1157320
Chromosome Location	chr3:99013936-99013937
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10935706	0.90[ASN][1000 genomes]
rs1383840	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1402264	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1829552	0.90[ASN][1000 genomes]
rs1905004	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1972138	0.94[ASN][1000 genomes]
rs2200020	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4303903	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4619817	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6786724	0.90[ASN][1000 genomes]
rs6792039	0.90[ASN][1000 genomes]
rs6809700	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7614301	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007140	chr3:98421229-99202458	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv536663	chr3:98421229-99202458	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1007486	chr3:98597738-99249081	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv530026	chr3:98837320-99340537	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv1798220	chr3:98894142-99020463	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1002786	chr3:98944446-99013936	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv818163	chr3:99005053-99015616	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99013000-99014000	Enhancers	Muscle Satellite Cultured Cells	--
2	chr3:99013200-99014000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr3:99013200-99014200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:99013400-99014000	Enhancers	H1 Cell Line	embryonic stem cell
5	chr3:99013400-99014000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr3:99013400-99014000	Enhancers	Fetal Kidney	kidney
7	chr3:99013400-99014000	Enhancers	Dnd41	blood
8	chr3:99013600-99014000	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr3:99013600-99014000	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr3:99013600-99014200	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr3:99013600-99014200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
12	chr3:99013600-99014400	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr3:99013600-99014400	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr3:99013800-99014000	Active TSS	iPS-20b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links