Variant report

Variant	rs115732762
Chromosome Location	chr10:118765349-118765350
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF263	chr10:118763725-118765569	HEK293-T-REx	kidney:	n/a	chr10:118764720-118764729 chr10:118764709-118764730
2	RAD21	chr10:118764633-118765387	H1-hESC	embryonic stem cell:	n/a	chr10:118765160-118765173 chr10:118764720-118764734
3	MAX	chr10:118764039-118765501	SK-N-SH	brain:	n/a	chr10:118765306-118765322 chr10:118765332-118765339
4	POLR2A	chr10:118763901-118765557	MCF-7	breast:	n/a	n/a
5	EP300	chr10:118763771-118765361	K562	blood:	n/a	chr10:118764420-118764429 chr10:118764696-118764703 chr10:118765161-118765177 chr10:118764482-118764498
6	POLR2A	chr10:118763959-118765525	K562	blood:	n/a	n/a
7	TCF7L2	chr10:118764107-118765399	PANC-1	pancreas:	n/a	n/a
8	POLR2A	chr10:118765207-118765519	A549	lung:	n/a	n/a
9	TAL1	chr10:118764294-118765530	K562	blood:	n/a	n/a
10	ESR1	chr10:118765169-118765621	ECC-1	luminal epithelium:	n/a	chr10:118765431-118765446 chr10:118765430-118765447 chr10:118765378-118765393
11	MAX	chr10:118763653-118765765	A549	lung:	n/a	chr10:118765306-118765322 chr10:118765332-118765339
12	MAX	chr10:118763805-118765440	Hela-S3	cervix:	n/a	chr10:118765306-118765322 chr10:118765332-118765339
13	NFIC	chr10:118763787-118765767	ECC-1	luminal epithelium:	n/a	n/a
14	UBTF	chr10:118764042-118765595	K562	blood:	n/a	n/a
15	JUN	chr10:118764599-118765501	K562	blood:	n/a	chr10:118764805-118764814 chr10:118764800-118764809
16	E2F6	chr10:118765010-118765598	H1-hESC	embryonic stem cell:	n/a	chr10:118765439-118765449 chr10:118765120-118765127 chr10:118765116-118765130 chr10:118765120-118765127 chr10:118765138-118765147 chr10:118765120-118765127
17	POLR2A	chr10:118763920-118765633	ECC-1	luminal epithelium:	n/a	n/a
18	POLR2A	chr10:118764020-118765538	HepG2	liver:	n/a	n/a
19	TAF1	chr10:118765065-118765426	K562	blood:	n/a	n/a
20	MAX	chr10:118763980-118765683	HepG2	liver:	n/a	chr10:118765306-118765322 chr10:118765332-118765339
21	MAX	chr10:118765114-118765532	H1-hESC	embryonic stem cell:	n/a	chr10:118765306-118765322 chr10:118765332-118765339
22	HMGN3	chr10:118764197-118765377	K562	blood:	n/a	n/a
23	CREB1	chr10:118764010-118765603	HepG2	liver:	n/a	n/a
24	CEBPB	chr10:118764641-118765406	A549	lung:	n/a	chr10:118765145-118765156
25	MAX	chr10:118765053-118765497	K562	blood:	n/a	chr10:118765306-118765322 chr10:118765332-118765339
26	POLR2A	chr10:118763919-118765711	HCT-116	colon:	n/a	n/a
27	POLR2A	chr10:118764029-118765494	MCF-7	breast:	n/a	n/a
28	TCF12	chr10:118763750-118765684	ECC-1	luminal epithelium:	n/a	chr10:118764507-118764514
29	POLR2A	chr10:118763603-118765568	Hela-S3	cervix:	n/a	n/a
30	TEAD4	chr10:118763684-118765767	ECC-1	luminal epithelium:	n/a	n/a
31	POLR2A	chr10:118765243-118765350	A549	lung:	n/a	n/a
32	EP300	chr10:118764085-118765513	ECC-1	luminal epithelium:	n/a	chr10:118764420-118764429 chr10:118764696-118764703 chr10:118765161-118765177 chr10:118764482-118764498
33	KAP1	chr10:118765086-118765523	U2OS	brain:	n/a	n/a
34	YY1	chr10:118764023-118765351	K562	blood:	n/a	chr10:118764418-118764429
35	MAX	chr10:118763821-118765607	MCF-7	breast:	n/a	chr10:118765306-118765322 chr10:118765332-118765339
36	POLR2A	chr10:118763972-118765582	K562	blood:	n/a	n/a
37	JUND	chr10:118764030-118765660	K562	blood:	n/a	chr10:118764805-118764814 chr10:118764800-118764809
38	ZBTB7A	chr10:118763987-118765616	ECC-1	luminal epithelium:	n/a	chr10:118765137-118765146
39	SMARCB1	chr10:118763976-118765609	Hela-S3	cervix:	n/a	n/a
40	YY1	chr10:118764098-118765554	ECC-1	luminal epithelium:	n/a	chr10:118764418-118764429
41	POLR2A	chr10:118765179-118765376	A549	lung:	n/a	n/a
42	TCF12	chr10:118763864-118765812	ECC-1	luminal epithelium:	n/a	chr10:118764507-118764514
43	YY1	chr10:118763987-118765435	ECC-1	luminal epithelium:	n/a	chr10:118764418-118764429
44	GTF2F1	chr10:118765223-118765385	K562	blood:	n/a	n/a
45	MAX	chr10:118764124-118765551	H1-hESC	embryonic stem cell:	n/a	chr10:118765306-118765322 chr10:118765332-118765339
46	MAFK	chr10:118765141-118765662	K562	blood:	n/a	n/a
47	E2F6	chr10:118763924-118765643	H1-hESC	embryonic stem cell:	n/a	chr10:118764591-118764599 chr10:118765439-118765449 chr10:118764591-118764598 chr10:118765120-118765127 chr10:118764591-118764599 chr10:118765116-118765130 chr10:118765120-118765127 chr10:118764494-118764504 chr10:118765138-118765147 chr10:118765120-118765127
48	CTCF	chr10:118765320-118765470	SK-N-SH_RA	brain:	n/a	n/a
49	MAX	chr10:118763615-118765878	HCT-116	colon:	n/a	chr10:118765306-118765322 chr10:118765332-118765339
50	BHLHE40	chr10:118763839-118765559	K562	blood:	n/a	chr10:118764791-118764807 chr10:118764487-118764503

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:118765319-118765369	NHDF-neo	bronchial:	n/a
2	chr10:118765335-118765385	HRE	kidney:	n/a
3	chr10:118765319-118765369	SK-N-MC	brain:	n/a
4	chr10:118765319-118765369	HEEpiC	esophagus:	n/a
5	chr10:118765319-118765369	HUVEC	blood vessel:	n/a
6	chr10:118765335-118765385	NT2-D1	testis:	n/a
7	chr10:118765335-118765385	HPAEpiC	pulmonary alveolar:	n/a
8	chr10:118765319-118765369	GM06990	blood:	n/a
9	chr10:118765335-118765385	SK-N-SH	brain:	n/a
10	chr10:118765335-118765385	NHDF-neo	bronchial:	n/a
11	chr10:118765335-118765385	NB4	blood:	n/a
12	chr10:118765335-118765385	T-47D	breast:	n/a
13	chr10:118765335-118765385	CMK	blood:	n/a
14	chr10:118765319-118765369	AG04449	skin:	fetal
15	chr10:118765319-118765369	HMEC	breast:	n/a
16	chr10:118765335-118765385	BE2_C	brain:	n/a
17	chr10:118765319-118765369	MCF10A-Er-Src	breast:	n/a
18	chr10:118765335-118765385	ECC-1	luminal epithelium:	n/a
19	chr10:118765335-118765385	Hepatocyte	liver:	n/a
20	chr10:118765319-118765369	HPAEpiC	pulmonary alveolar:	n/a
21	chr10:118765319-118765369	AG04450	lung:	fetal
22	chr10:118765319-118765369	BJ	skin:	n/a
23	chr10:118765335-118765385	ovcar-3	ovarian:	n/a
24	chr10:118765319-118765369	HRPEpiC	eye:	n/a
25	chr10:118765335-118765385	AG09309	skin:	n/a
26	chr10:118765335-118765385	HAEpiC	amniotic membrane:	n/a
27	chr10:118765335-118765385	AoSMC	blood vessel:	n/a
28	chr10:118765335-118765385	AG04449	skin:	fetal
29	chr10:118765335-118765385	H1-hESC	embryonic stem cell:	embryo
30	chr10:118765319-118765369	GM12892	blood:	n/a
31	chr10:118765319-118765369	HCPEpiC	choroid plexus:	n/a
32	chr10:118765335-118765385	SK-N-MC	brain:	n/a
33	chr10:118765335-118765385	IMR90	lung:	fetal
34	chr10:118765335-118765385	HCM	heart:	n/a
35	chr10:118765319-118765369	SK-N-SH	brain:	n/a
36	chr10:118765335-118765385	HUVEC	blood vessel:	n/a
37	chr10:118765335-118765385	HEK293	kidney:	embryo
38	chr10:118765319-118765369	GM12878	blood:	n/a
39	chr10:118765335-118765385	PrEC	prostate:	n/a
40	chr10:118765319-118765369	HEK293	kidney:	embryo
41	chr10:118765319-118765369	AG10803	skin:	n/a
42	chr10:118765319-118765369	A549	lung:	n/a
43	chr10:118765319-118765369	Hepatocyte	liver:	n/a
44	chr10:118765319-118765369	SK-N-SH_RA	brain:	n/a
45	chr10:118765335-118765385	HNPCEpiC	eye:	n/a
46	chr10:118765335-118765385	GM19239	blood:	n/a
47	chr10:118765319-118765369	ProgFib	skin:	n/a
48	chr10:118765319-118765369	ECC-1	luminal epithelium:	n/a
49	chr10:118765335-118765385	MCF10A-Er-Src	breast:	n/a
50	chr10:118765335-118765385	HCF	heart:	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:118765114..118768175-chr10:118770999..118774519,3	K562	blood:
2	chr1:235491265..235492225-chr10:118764585..118765416,2	Hela-S3	cervix:
3	chr10:118718724..118721628-chr10:118764683..118766816,3	MCF-7	breast:

Variant related genes	Relation type
KIAA1598	TF binding region
KIAA1598	CpG island
ENSG00000152904	Chromatin interaction
ENSG00000054267	Chromatin interaction
ENSG00000187164	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755506	chr10:118748764-118800107	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
2	esv3525989	chr10:118764562-118770560	Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	n/a
3	esv3525990	chr10:118765187-118770410	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	n/a
4	esv3525991	chr10:118765187-118770410	Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118761400-118765600	Active TSS	Brain Angular Gyrus	brain
2	chr10:118763400-118766200	Active TSS	A549	lung
3	chr10:118763600-118765400	Active TSS	HUES6 Cell Line	embryonic stem cell
4	chr10:118763600-118765400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr10:118763600-118765600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr10:118763600-118765600	Active TSS	Pancreatic Islets	Pancreatic Islet
7	chr10:118763600-118766200	Active TSS	ES-I3 Cell Line	embryonic stem cell
8	chr10:118763800-118765400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
9	chr10:118763800-118765400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr10:118763800-118765400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr10:118763800-118765400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr10:118763800-118765400	Flanking Active TSS	Primary hematopoietic stem cells	blood
13	chr10:118763800-118765400	Active TSS	Fetal Kidney	kidney
14	chr10:118763800-118765400	Active TSS	HSMMtube	muscle
15	chr10:118763800-118765400	Bivalent/Poised TSS	Osteobl	bone
16	chr10:118763800-118765600	Active TSS	H9 Cell Line	embryonic stem cell
17	chr10:118763800-118765600	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr10:118763800-118765600	Flanking Active TSS	Adipose Nuclei	Adipose
19	chr10:118763800-118765600	Active TSS	HSMM	muscle
20	chr10:118764000-118765400	Active TSS	iPS-15b Cell Line	embryonic stem cell
21	chr10:118764000-118765400	Active TSS	Placenta Amnion	Placenta Amnion
22	chr10:118764000-118765600	Bivalent/Poised TSS	Primary T cells from cord blood	blood
23	chr10:118764000-118765600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr10:118764000-118765600	Active TSS	Fetal Brain Female	brain
25	chr10:118764200-118765400	Active TSS	HUES48 Cell Line	embryonic stem cell
26	chr10:118764200-118765400	Transcr. at gene 5' and 3'	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr10:118764200-118765600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
28	chr10:118764200-118765600	Active TSS	Muscle Satellite Cultured Cells	--
29	chr10:118764400-118765400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr10:118764400-118765400	Active TSS	Fetal Heart	heart
31	chr10:118764400-118765400	Active TSS	NHLF	lung
32	chr10:118764600-118765600	Bivalent/Poised TSS	Primary hematopoietic stem cells short term culture	blood
33	chr10:118764600-118765600	Flanking Active TSS	Spleen	Spleen
34	chr10:118764800-118765400	Bivalent Enhancer	Primary B cells from peripheral blood	blood
35	chr10:118764800-118765400	Bivalent/Poised TSS	Primary T regulatory cells fromperipheralblood	blood
36	chr10:118764800-118765400	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
37	chr10:118764800-118765400	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
38	chr10:118764800-118765400	Flanking Active TSS	HMEC	breast
39	chr10:118764800-118765600	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
40	chr10:118764800-118765600	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
41	chr10:118764800-118765600	Flanking Active TSS	Stomach Smooth Muscle	stomach
42	chr10:118764800-118765600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
43	chr10:118765000-118765400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
44	chr10:118765000-118765400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
45	chr10:118765000-118765400	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
46	chr10:118765000-118765400	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
47	chr10:118765000-118765400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr10:118765000-118765400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr10:118765000-118765400	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
50	chr10:118765000-118765400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin

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