Variant report

Variant	rs11573728
Chromosome Location	chr9:110093446-110093447
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:110086278..110088143-chr9:110093420..110094981,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs12346677	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869351	chr9:109593212-110191170	Active TSS Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110058600-110098600	Weak transcription	Small Intestine	intestine
2	chr9:110061400-110094600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr9:110065600-110098600	Strong transcription	Dnd41	blood
4	chr9:110070200-110104400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr9:110070400-110099400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr9:110071400-110103000	Weak transcription	Stomach Mucosa	stomach
7	chr9:110077600-110093800	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr9:110079400-110097400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr9:110079600-110095800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr9:110079600-110098800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr9:110079800-110094600	Weak transcription	Brain Angular Gyrus	brain
12	chr9:110079800-110097600	Strong transcription	HSMM	muscle
13	chr9:110079800-110098000	Strong transcription	HUES6 Cell Line	embryonic stem cell
14	chr9:110080000-110096800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
15	chr9:110080200-110097200	Strong transcription	Primary T helper cells fromperipheralblood	blood
16	chr9:110080600-110097000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr9:110080600-110097400	Strong transcription	Primary B cells from cord blood	blood
18	chr9:110080600-110097800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr9:110084000-110096600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr9:110084000-110097800	Strong transcription	Hela-S3	cervix
21	chr9:110084800-110098800	Strong transcription	HUES64 Cell Line	embryonic stem cell
22	chr9:110085200-110094800	Weak transcription	Aorta	Aorta
23	chr9:110085400-110094600	Weak transcription	Brain Hippocampus Middle	brain
24	chr9:110085400-110097800	Strong transcription	Liver	Liver
25	chr9:110086200-110097200	Strong transcription	HepG2	liver
26	chr9:110086200-110097600	Strong transcription	NHLF	lung
27	chr9:110087200-110093800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr9:110087200-110094600	Weak transcription	Colon Smooth Muscle	Colon
29	chr9:110087200-110098600	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr9:110087400-110094600	Weak transcription	Colonic Mucosa	Colon
31	chr9:110087400-110095000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr9:110087400-110097200	Strong transcription	Primary monocytes fromperipheralblood	blood
33	chr9:110087600-110103400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr9:110088200-110096600	Strong transcription	NHDF-Ad	bronchial
35	chr9:110088400-110093800	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr9:110088400-110094800	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr9:110088400-110094800	Weak transcription	Brain Substantia Nigra	brain
38	chr9:110088400-110097200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr9:110088400-110097800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr9:110088400-110097800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr9:110088400-110098800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr9:110088400-110101400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
43	chr9:110088600-110093600	Weak transcription	Ovary	ovary
44	chr9:110088600-110094000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr9:110088600-110094000	Weak transcription	Rectal Smooth Muscle	rectum
46	chr9:110088600-110094200	Weak transcription	Fetal Brain Female	brain
47	chr9:110088600-110095000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr9:110088600-110095200	Weak transcription	Brain Cingulate Gyrus	brain
49	chr9:110088600-110097000	Strong transcription	GM12878-XiMat	blood
50	chr9:110088600-110098200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links