Variant report

Variant	rs11574450
Chromosome Location	chr4:74847111-74847112
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10518117	1.00[CEU][hapmap]
rs11574452	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1435520	1.00[CEU][hapmap]
rs1511815	1.00[CEU][hapmap]
rs16850360	0.85[CEU][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1951233	1.00[CEU][hapmap]
rs1957069	1.00[CEU][hapmap]
rs2145614	0.85[CEU][hapmap]
rs2180883	0.85[CEU][hapmap]
rs3111693	0.85[CEU][hapmap]
rs3117602	0.85[CEU][hapmap]
rs353042	1.00[CEU][hapmap]
rs3756074	1.00[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6813952	0.87[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001725	chr4:74354050-74860924	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv525980	chr4:74731526-75382209	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv1004768	chr4:74774372-75109579	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv1006218	chr4:74782324-75105424	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	nsv1006029	chr4:74793922-74986664	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74837000-74850800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:74842200-74847200	Enhancers	Muscle Satellite Cultured Cells	--
3	chr4:74842200-74847200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr4:74843600-74847400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr4:74843800-74847400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr4:74845200-74847400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr4:74845200-74850600	Weak transcription	NHDF-Ad	bronchial
8	chr4:74845400-74847200	Weak transcription	NHEK	skin
9	chr4:74845400-74847400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr4:74845400-74853400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr4:74845600-74847200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr4:74845600-74847200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr4:74845600-74847200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr4:74845600-74847200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr4:74845600-74847200	Weak transcription	Fetal Intestine Large	intestine
16	chr4:74845600-74847400	Weak transcription	A549	lung
17	chr4:74845600-74847400	Weak transcription	NHLF	lung
18	chr4:74845600-74848000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr4:74845600-74853000	Weak transcription	K562	blood
20	chr4:74846200-74847200	Weak transcription	HSMM	muscle
21	chr4:74846200-74849400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr4:74846400-74847600	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr4:74846600-74847400	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr4:74846800-74847600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr4:74847000-74847400	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr4:74847000-74847600	Enhancers	Gastric	stomach
27	chr4:74847000-74847600	Enhancers	Lung	lung
28	chr4:74847000-74847800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
29	chr4:74847000-74848000	Active TSS	ES-I3 Cell Line	embryonic stem cell
30	chr4:74847000-74848000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr4:74847000-74848600	Enhancers	H1 Cell Line	embryonic stem cell

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