Variant report

Variant	rs115754241
Chromosome Location	chr10:44877138-44877139
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44874626..44876126-chr10:44876143..44877664,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054649	chr10:44848921-44889713	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv550699	chr10:44868257-44882203	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv895089	chr10:44874867-44880838	Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv895090	chr10:44874867-44884959	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv895091	chr10:44875040-44888130	Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv895092	chr10:44875166-44884959	Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv895093	chr10:44876461-44884959	Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv895094	chr10:44876499-44884959	Bivalent Enhancer Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv895095	chr10:44876586-44884959	Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv895096	chr10:44876586-44886206	Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv895097	chr10:44876586-44888130	Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44850600-44877600	Weak transcription	Duodenum Mucosa	Duodenum
2	chr10:44860000-44879000	Weak transcription	Gastric	stomach
3	chr10:44864800-44877800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr10:44865600-44878000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr10:44866000-44877600	Weak transcription	Fetal Brain Female	brain
6	chr10:44866400-44878600	Weak transcription	Liver	Liver
7	chr10:44866600-44877600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:44867000-44878200	Weak transcription	Brain Hippocampus Middle	brain
9	chr10:44867400-44878000	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr10:44867600-44878600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr10:44869600-44878200	Weak transcription	Brain Substantia Nigra	brain
12	chr10:44870200-44877600	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr10:44871000-44877600	Weak transcription	Rectal Smooth Muscle	rectum
14	chr10:44872400-44877400	Weak transcription	Fetal Kidney	kidney
15	chr10:44873200-44877600	Weak transcription	Lung	lung
16	chr10:44874400-44877800	Weak transcription	Right Ventricle	heart
17	chr10:44874600-44877800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr10:44874600-44877800	Enhancers	Psoas Muscle	Psoas
19	chr10:44874800-44877800	Weak transcription	Spleen	Spleen
20	chr10:44874800-44879200	Weak transcription	Aorta	Aorta
21	chr10:44875200-44877600	Weak transcription	Ovary	ovary
22	chr10:44875200-44877800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr10:44875200-44878000	Weak transcription	NH-A	brain
24	chr10:44875600-44877400	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr10:44875800-44877600	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr10:44875800-44878000	Weak transcription	NHLF	lung
27	chr10:44876000-44877600	Weak transcription	Colon Smooth Muscle	Colon
28	chr10:44876000-44878000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
29	chr10:44876000-44878600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr10:44876200-44877400	Enhancers	HUES64 Cell Line	embryonic stem cell
31	chr10:44876200-44877600	Enhancers	H9 Cell Line	embryonic stem cell
32	chr10:44876200-44877600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr10:44876200-44877800	Enhancers	Brain Germinal Matrix	brain
34	chr10:44876200-44878400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
35	chr10:44876400-44877400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr10:44876400-44877400	Enhancers	iPS-18 Cell Line	embryonic stem cell
37	chr10:44876400-44877400	Active TSS	Adipose Nuclei	Adipose
38	chr10:44876400-44877600	Enhancers	HUES48 Cell Line	embryonic stem cell
39	chr10:44876400-44877600	Enhancers	HUES6 Cell Line	embryonic stem cell
40	chr10:44876400-44877600	Weak transcription	NHDF-Ad	bronchial
41	chr10:44876400-44878000	Enhancers	H1 Cell Line	embryonic stem cell
42	chr10:44876600-44877400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr10:44876600-44877400	Weak transcription	Fetal Lung	lung
44	chr10:44876600-44877600	Enhancers	Fetal Muscle Trunk	muscle
45	chr10:44876600-44877600	Enhancers	Fetal Muscle Leg	muscle
46	chr10:44876600-44877600	Weak transcription	Pancreas	Pancrea
47	chr10:44876600-44877600	Weak transcription	Right Atrium	heart
48	chr10:44876600-44878000	Weak transcription	Brain Anterior Caudate	brain
49	chr10:44876800-44877600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr10:44876800-44877800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links