Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10268819	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10499696	1.00[ASN][1000 genomes]
rs11575298	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11575300	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11575301	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11575342	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11575404	1.00[ASN][1000 genomes]
rs11765109	1.00[ASN][1000 genomes]
rs11771818	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs12718611	0.87[EUR][1000 genomes]
rs1466163	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17553791	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17634771	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs2167368	1.00[ASN][1000 genomes]
rs6593002	1.00[ASN][1000 genomes]
rs6952381	1.00[ASN][1000 genomes]
rs6975015	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6975747	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73342846	1.00[ASN][1000 genomes]
rs7785984	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7809234	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016665	chr7:50452552-51404524	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv888021	chr7:50538589-50610071	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv606905	chr7:50544063-50565963	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:50543600-50595000	Weak transcription	Liver	Liver
2	chr7:50545800-50565800	Weak transcription	HepG2	liver
3	chr7:50548800-50564400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr7:50557400-50564200	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr7:50559600-50564200	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr7:50559600-50564800	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr7:50559800-50562800	Strong transcription	Fetal Intestine Small	intestine
8	chr7:50560600-50566200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr7:50560800-50564200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr7:50560800-50564200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr7:50560800-50581000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr7:50561000-50563800	Weak transcription	Stomach Mucosa	stomach
13	chr7:50561000-50564200	Weak transcription	Gastric	stomach
14	chr7:50561200-50562200	Enhancers	HUVEC	blood vessel
15	chr7:50561200-50562600	Weak transcription	Duodenum Mucosa	Duodenum
16	chr7:50561200-50563600	Weak transcription	K562	blood
17	chr7:50561200-50564200	Weak transcription	Spleen	Spleen
18	chr7:50561400-50562800	Weak transcription	Fetal Intestine Large	intestine
19	chr7:50561400-50564000	Weak transcription	Ovary	ovary
20	chr7:50561800-50562800	Weak transcription	Primary hematopoietic stem cells	blood
21	chr7:50562000-50564400	Weak transcription	Small Intestine	intestine

Quick Search: