Variant report

Variant	rs1157636
Chromosome Location	chr11:24404247-24404248
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10834329	0.80[ASN][1000 genomes]
rs10834331	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs10834332	0.82[ASN][1000 genomes]
rs11027854	0.81[ASN][1000 genomes]
rs11027857	0.82[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs11027860	0.81[ASN][1000 genomes]
rs11027863	0.80[ASN][1000 genomes]
rs11027864	0.80[ASN][1000 genomes]
rs11027867	0.80[ASN][1000 genomes]
rs1157635	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs12416942	0.81[ASN][1000 genomes]
rs1372961	0.93[EUR][1000 genomes]
rs1443040	0.81[ASN][1000 genomes]
rs1443041	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs1899538	0.80[ASN][1000 genomes]
rs1899542	0.81[ASN][1000 genomes]
rs7122726	0.80[ASN][1000 genomes]
rs7127372	0.81[ASN][1000 genomes]
rs72875849	0.81[ASN][1000 genomes]
rs72875860	0.81[ASN][1000 genomes]
rs72875878	0.80[ASN][1000 genomes]
rs72875881	0.81[ASN][1000 genomes]
rs72875882	0.80[ASN][1000 genomes]
rs72875883	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055026	chr11:24151133-24737122	Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1037744	chr11:24174588-24737122	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1042325	chr11:24399097-24432782	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1157636	LIN7C	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:24402200-24408000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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