Variant report

Variant	rs115768730
Chromosome Location	chr11:34173388-34173389
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34159433..34161225-chr11:34173163..34174695,2	K562	blood:
2	chr11:34157193..34160201-chr11:34169377..34173390,4	K562	blood:
3	chr11:34172563..34174315-chr11:34176884..34178666,2	MCF-7	breast:
4	chr11:34173254..34175718-chr11:34185959..34188757,2	K562	blood:
5	chr11:34098869..34100659-chr11:34172311..34174977,2	K562	blood:

Variant related genes	Relation type
ENSG00000135372	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv820233	chr11:34171363-34174020	Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Enhancers	Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv820477	chr11:34171916-34174282	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers	Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv825824	chr11:34172028-34173568	Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers	Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv825825	chr11:34172028-34173952	Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3'	Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv825826	chr11:34172028-34174021	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3'	Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
6	esv20629	chr11:34172092-34174187	Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers	Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv825828	chr11:34172108-34173952	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers	Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
8	nsv825829	chr11:34172108-34173978	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers	Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
9	nsv825830	chr11:34172108-34174067	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers	Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
10	nsv825832	chr11:34172187-34173952	Genic enhancers Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3'	Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
11	nsv825833	chr11:34172187-34174076	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers	Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34128600-34176400	Strong transcription	Fetal Stomach	stomach
2	chr11:34128800-34178000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr11:34129000-34177400	Strong transcription	Osteobl	bone
4	chr11:34129000-34177800	Strong transcription	HUES48 Cell Line	embryonic stem cell
5	chr11:34129200-34174600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr11:34129200-34177800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr11:34129400-34173400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr11:34129400-34175600	Strong transcription	Fetal Thymus	thymus
9	chr11:34129600-34175000	Strong transcription	Brain Anterior Caudate	brain
10	chr11:34129600-34177200	Strong transcription	Skeletal Muscle Female	skeletal muscle
11	chr11:34129600-34178200	Strong transcription	Liver	Liver
12	chr11:34129800-34175000	Strong transcription	Primary T cells from cord blood	blood
13	chr11:34129800-34175000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr11:34129800-34175600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr11:34130000-34173600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr11:34130000-34174600	Strong transcription	Dnd41	blood
17	chr11:34130000-34177000	Strong transcription	Sigmoid Colon	Sigmoid Colon
18	chr11:34130000-34181800	Strong transcription	A549	lung
19	chr11:34130200-34177600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr11:34136200-34177200	Strong transcription	Adipose Nuclei	Adipose
21	chr11:34136200-34177200	Strong transcription	Skeletal Muscle Male	skeletal muscle
22	chr11:34138800-34185600	Strong transcription	Fetal Brain Female	brain
23	chr11:34146200-34187600	Strong transcription	Cortex derived primary cultured neurospheres	brain
24	chr11:34148000-34176200	Strong transcription	Brain Hippocampus Middle	brain
25	chr11:34150400-34173800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr11:34150600-34175200	Strong transcription	Gastric	stomach
27	chr11:34150600-34178000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
28	chr11:34150800-34174200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr11:34150800-34177200	Strong transcription	HUES64 Cell Line	embryonic stem cell
30	chr11:34151800-34175400	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr11:34152000-34174000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr11:34152000-34174200	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr11:34152000-34175000	Strong transcription	Esophagus	oesophagus
34	chr11:34152000-34175000	Strong transcription	Stomach Smooth Muscle	stomach
35	chr11:34152200-34177600	Strong transcription	NHEK	skin
36	chr11:34152200-34184800	Strong transcription	Brain Germinal Matrix	brain
37	chr11:34152400-34186600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr11:34154600-34176800	Strong transcription	iPS-15b Cell Line	embryonic stem cell
39	chr11:34155800-34177800	Strong transcription	Right Ventricle	heart
40	chr11:34157800-34176200	Strong transcription	H9 Cell Line	embryonic stem cell
41	chr11:34157800-34176200	Strong transcription	Thymus	Thymus
42	chr11:34158800-34174000	Strong transcription	Lung	lung
43	chr11:34164800-34177400	Strong transcription	Left Ventricle	heart
44	chr11:34165400-34177400	Weak transcription	Right Atrium	heart
45	chr11:34165800-34184600	Weak transcription	Stomach Mucosa	stomach
46	chr11:34166800-34182400	Weak transcription	Psoas Muscle	Psoas
47	chr11:34168400-34173600	Strong transcription	Primary B cells from peripheral blood	blood
48	chr11:34169000-34174200	Strong transcription	GM12878-XiMat	blood
49	chr11:34169600-34173600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr11:34169600-34173800	Weak transcription	Fetal Brain Male	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links