The 2.0 version of rSNPBase

Variant report

Variant rs11577171
Chromosome Location chr1:94640215-94640216
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:70 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:94626800-94643400 Weak transcription Fetal Heart heart
2 chr1:94631800-94646600 Weak transcription Cortex derived primary cultured neurospheres brain
3 chr1:94634200-94643000 Strong transcription HUVEC blood vessel
4 chr1:94634200-94656600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
5 chr1:94634200-94658400 Strong transcription HSMM muscle
6 chr1:94634200-94660800 Strong transcription NH-A brain
7 chr1:94634200-94661800 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
8 chr1:94634200-94675200 Weak transcription Rectal Smooth Muscle rectum
9 chr1:94634400-94646400 Strong transcription Muscle Satellite Cultured Cells --
10 chr1:94634400-94646600 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
11 chr1:94634400-94660400 Strong transcription NHDF-Ad bronchial
12 chr1:94634600-94662000 Strong transcription HMEC breast
13 chr1:94634800-94644400 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
14 chr1:94634800-94645000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
15 chr1:94635000-94646800 Weak transcription Esophagus oesophagus
16 chr1:94635000-94658000 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
17 chr1:94635800-94646200 Strong transcription Osteobl bone
18 chr1:94636000-94658400 Strong transcription Liver Liver
19 chr1:94636200-94641000 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
20 chr1:94636200-94644000 Strong transcription Breast Myoepithelial Primary Cells Breast
21 chr1:94636200-94673400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
22 chr1:94636600-94641200 Weak transcription iPS-15b Cell Line embryonic stem cell
23 chr1:94636600-94647400 Strong transcription Adipose Nuclei Adipose
24 chr1:94636800-94644200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
25 chr1:94636800-94645000 Strong transcription Skeletal Muscle Female skeletal muscle
26 chr1:94637600-94650800 Weak transcription Pancreatic Islets Pancreatic Islet
27 chr1:94637800-94648800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
28 chr1:94637800-94656200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
29 chr1:94638000-94644000 Weak transcription Stomach Smooth Muscle stomach
30 chr1:94638200-94641800 Weak transcription Placenta Placenta
31 chr1:94638200-94646000 Weak transcription Hela-S3 cervix
32 chr1:94638200-94646400 Weak transcription Fetal Lung lung
33 chr1:94638200-94654400 Weak transcription Ovary ovary
34 chr1:94638400-94647400 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
35 chr1:94638400-94647800 Weak transcription Brain Inferior Temporal Lobe brain
36 chr1:94638400-94669200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
37 chr1:94638600-94641000 Weak transcription HUES48 Cell Line embryonic stem cell
38 chr1:94638800-94647400 Strong transcription Fetal Muscle Trunk muscle
39 chr1:94639000-94640400 Strong transcription HepG2 liver
40 chr1:94639000-94645200 Strong transcription Fetal Muscle Leg muscle
41 chr1:94639000-94647400 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
42 chr1:94639000-94647600 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
43 chr1:94639200-94642000 Strong transcription NHLF lung
44 chr1:94639200-94649000 Weak transcription Right Atrium heart
45 chr1:94639400-94640400 Strong transcription HUES6 Cell Line embryonic stem cell
46 chr1:94639400-94640400 Strong transcription Duodenum Smooth Muscle Duodenum
47 chr1:94639400-94640400 Strong transcription A549 lung
48 chr1:94639400-94641000 Strong transcription Fetal Kidney kidney
49 chr1:94639400-94641800 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
50 chr1:94639400-94641800 Strong transcription NHEK skin

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Last update: Aug 31, 2015