Variant report

Variant	rs11577681
Chromosome Location	chr1:44997097-44997098
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:44992372..44995279-chr1:44995310..44998040,4	K562	blood:
2	chr1:44985539..44988596-chr1:44996958..44999137,3	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12403454	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16832024	1.00[CHB][hapmap]
rs17386059	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs272531	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs272533	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs28522772	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3896232	0.83[CEU][hapmap]
rs746733	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533037	chr1:44361728-45333408	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	469 gene(s)	inside rSNPs	diseases
2	nsv1004861	chr1:44843654-45210176	Flanking Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	346 gene(s)	inside rSNPs	diseases
3	nsv534940	chr1:44843654-45210176	Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	346 gene(s)	inside rSNPs	diseases
4	nsv461395	chr1:44898998-45119965	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
5	nsv546144	chr1:44898998-45119965	Genic enhancers Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:44991600-44998400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:44992200-44997600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:44992200-45000600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr1:44992800-44997400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr1:44992800-44997400	Weak transcription	Stomach Mucosa	stomach
6	chr1:44992800-44997800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:44992800-44998200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr1:44993000-44997200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr1:44993000-44997600	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr1:44994600-44999000	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr1:44996200-45004400	Enhancers	Brain Substantia Nigra	brain
12	chr1:44996400-44997600	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr1:44996400-44997800	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr1:44996600-44998400	Enhancers	Brain Anterior Caudate	brain
15	chr1:44996600-44999000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr1:44996800-44997200	Enhancers	H9 Cell Line	embryonic stem cell
17	chr1:44996800-44997600	Enhancers	K562	blood
18	chr1:44996800-44998400	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr1:44996800-44998400	Enhancers	Brain Hippocampus Middle	brain
20	chr1:44996800-44998800	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr1:44996800-44998800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr1:44996800-44998800	Enhancers	HepG2	liver
23	chr1:44996800-44999800	Enhancers	Brain Inferior Temporal Lobe	brain
24	chr1:44996800-45001600	Enhancers	Brain Cingulate Gyrus	brain
25	chr1:44997000-44997200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr1:44997000-44997200	Enhancers	A549	lung
27	chr1:44997000-44997600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
28	chr1:44997000-44998600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
29	chr1:44997000-44998800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr1:44997000-44998800	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr1:44997000-44998800	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
32	chr1:44997000-44998800	Enhancers	HMEC	breast
33	chr1:44997000-44998800	Enhancers	NHEK	skin
34	chr1:44997000-44999000	Enhancers	Primary hematopoietic stem cells	blood
35	chr1:44997000-45004200	Enhancers	Brain Angular Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links