Variant report
Variant | rs11578623 |
---|---|
Chromosome Location | chr1:228181777-228181778 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr1:228180647..228182707-chr1:228268126..228270057,2 | K562 | blood: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10916262 | 0.80[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs11577983 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11579417 | 0.82[EUR][1000 genomes] |
rs11579725 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs11580654 | 0.84[EUR][1000 genomes] |
rs11580665 | 0.82[EUR][1000 genomes] |
rs11581915 | 0.82[EUR][1000 genomes] |
rs11582265 | 0.80[ASN][1000 genomes] |
rs11582704 | 0.80[ASN][1000 genomes] |
rs11584128 | 0.82[EUR][1000 genomes] |
rs11587069 | 0.82[EUR][1000 genomes] |
rs11589007 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11589040 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11589467 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11589513 | 0.80[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs11590118 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12048010 | 0.80[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs1342351 | 0.89[EUR][1000 genomes] |
rs17621519 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1909647 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2107905 | 0.84[EUR][1000 genomes] |
rs35564923 | 0.82[EUR][1000 genomes] |
rs35826486 | 0.86[EUR][1000 genomes] |
rs3768329 | 0.80[ASN][1000 genomes] |
rs3768330 | 0.80[ASN][1000 genomes] |
rs4363416 | 0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs4546914 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4653894 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4653895 | 0.94[EUR][1000 genomes] |
rs56888086 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs56910872 | 0.82[EUR][1000 genomes] |
rs57146523 | 0.80[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs57292064 | 0.82[EUR][1000 genomes] |
rs57536604 | 0.82[EUR][1000 genomes] |
rs57556486 | 0.89[EUR][1000 genomes] |
rs57657087 | 0.80[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs58398048 | 0.82[EUR][1000 genomes] |
rs60213528 | 1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs61825130 | 0.80[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs6672422 | 0.98[EUR][1000 genomes] |
rs6672559 | 0.94[EUR][1000 genomes] |
rs6672601 | 0.98[EUR][1000 genomes] |
rs72472998 | 0.80[EUR][1000 genomes] |
rs72756204 | 0.80[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs73110722 | 0.89[EUR][1000 genomes] |
rs7530812 | 0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs882451 | 0.80[EUR][1000 genomes];0.80[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1010605 | chr1:227770415-228332690 | Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 73 gene(s) | inside rSNPs | diseases |
2 | esv32853 | chr1:227880116-228806209 | Enhancers Genic enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 187 gene(s) | inside rSNPs | diseases |
3 | nsv427952 | chr1:227881664-228308629 | Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 61 gene(s) | inside rSNPs | diseases |
4 | nsv826908 | chr1:227895386-228691100 | Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 157 gene(s) | inside rSNPs | diseases |
5 | nsv516409 | chr1:228035131-228296745 | Enhancers Genic enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 38 gene(s) | inside rSNPs | diseases |
6 | nsv523935 | chr1:228038124-228681749 | Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 137 gene(s) | inside rSNPs | diseases |
7 | nsv947387 | chr1:228140028-228206630 | Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
8 | nsv832803 | chr1:228155118-228313681 | Transcr. at gene 5' and 3' Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 38 gene(s) | inside rSNPs | diseases |
9 | nsv945348 | chr1:228173369-228186556 | Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription | Chromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
10 | nsv873252 | chr1:228174528-228371551 | Strong transcription Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 85 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:228180400-228182600 | Weak transcription | Placenta | Placenta |