The 2.0 version of rSNPBase

Variant report

Variant rs11579999
Chromosome Location chr1:212399925-212399926
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:46 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:212392600-212404800 Weak transcription Skeletal Muscle Female skeletal muscle
2 chr1:212397400-212400000 Enhancers Primary Natural Killer cells fromperipheralblood blood
3 chr1:212397400-212400200 Enhancers Adipose Nuclei Adipose
4 chr1:212397600-212400000 Enhancers Primary T cells fromperipheralblood blood
5 chr1:212397800-212400000 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
6 chr1:212397800-212400200 Enhancers Primary T helper memory cells from peripheral blood 1 blood
7 chr1:212397800-212400200 Enhancers Cortex derived primary cultured neurospheres brain
8 chr1:212398000-212402000 Enhancers HepG2 liver
9 chr1:212398200-212400000 Enhancers Primary T helper memory cells from peripheral blood 2 blood
10 chr1:212398200-212400000 Enhancers Fetal Thymus thymus
11 chr1:212398400-212400000 Enhancers Primary T helper cells PMA-I stimulated --
12 chr1:212398400-212400000 Enhancers Primary T killer naive cells fromperipheralblood blood
13 chr1:212398400-212400000 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
14 chr1:212398400-212400200 Enhancers Primary T helper cells fromperipheralblood blood
15 chr1:212398600-212400000 Enhancers Primary T helper 17 cells PMA-I stimulated --
16 chr1:212398600-212400000 Enhancers Fetal Adrenal Gland Adrenal Gland
17 chr1:212398600-212402000 Enhancers Liver Liver
18 chr1:212398800-212402600 Enhancers Stomach Mucosa stomach
19 chr1:212399000-212400000 Enhancers Primary B cells from peripheral blood blood
20 chr1:212399000-212400000 Enhancers Primary T cells from cord blood blood
21 chr1:212399000-212400000 Enhancers Spleen Spleen
22 chr1:212399000-212400000 Enhancers GM12878-XiMat blood
23 chr1:212399000-212400200 Enhancers Pancreas Pancrea
24 chr1:212399000-212401000 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
25 chr1:212399000-212403200 Enhancers Fetal Heart heart
26 chr1:212399200-212400000 Enhancers Primary T helper naive cells from peripheral blood blood
27 chr1:212399200-212400000 Enhancers Right Atrium heart
28 chr1:212399200-212400000 Enhancers Sigmoid Colon Sigmoid Colon
29 chr1:212399200-212400000 Enhancers Small Intestine intestine
30 chr1:212399400-212400000 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
31 chr1:212399400-212400000 Enhancers Thymus Thymus
32 chr1:212399400-212401600 Weak transcription Duodenum Mucosa Duodenum
33 chr1:212399400-212401800 Weak transcription Fetal Lung lung
34 chr1:212399400-212405200 Weak transcription Monocytes-CD14+_RO01746 blood
35 chr1:212399600-212401000 Weak transcription Lung lung
36 chr1:212399600-212403200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
37 chr1:212399600-212404000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
38 chr1:212399600-212404800 Weak transcription Fetal Muscle Leg muscle
39 chr1:212399800-212401000 Weak transcription Gastric stomach
40 chr1:212399800-212401600 Weak transcription Fetal Kidney kidney
41 chr1:212399800-212401600 Weak transcription Left Ventricle heart
42 chr1:212399800-212403200 Weak transcription Right Ventricle heart
43 chr1:212399800-212403800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
44 chr1:212399800-212405200 Weak transcription Primary monocytes fromperipheralblood blood
45 chr1:212399800-212406600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
46 chr1:212399800-212407800 Weak transcription Brain Anterior Caudate brain

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Last update: Aug 31, 2015