The 2.0 version of rSNPBase

Variant report

Variant rs11580158
Chromosome Location chr1:10018506-10018507
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:80 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:10004000-10034000 Weak transcription Aorta Aorta
2 chr1:10004200-10019400 Weak transcription NH-A brain
3 chr1:10004200-10021000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
4 chr1:10004200-10033800 Weak transcription Gastric stomach
5 chr1:10004400-10021200 Weak transcription HSMM muscle
6 chr1:10004400-10031600 Weak transcription Fetal Intestine Large intestine
7 chr1:10004600-10021000 Weak transcription HSMMtube muscle
8 chr1:10004600-10032400 Weak transcription Placenta Amnion Placenta Amnion
9 chr1:10004800-10031600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
10 chr1:10004800-10032200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
11 chr1:10004800-10032400 Weak transcription Colon Smooth Muscle Colon
12 chr1:10008000-10031800 Weak transcription Lung lung
13 chr1:10008000-10032000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
14 chr1:10008000-10032200 Weak transcription Colonic Mucosa Colon
15 chr1:10008000-10035000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
16 chr1:10008200-10032000 Weak transcription Liver Liver
17 chr1:10008200-10032200 Weak transcription Breast Myoepithelial Primary Cells Breast
18 chr1:10008400-10031800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
19 chr1:10008400-10032000 Weak transcription Duodenum Mucosa Duodenum
20 chr1:10008400-10032200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
21 chr1:10008600-10031800 Weak transcription Skeletal Muscle Male skeletal muscle
22 chr1:10008600-10033200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
23 chr1:10008600-10035600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
24 chr1:10010800-10018600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
25 chr1:10010800-10020400 Weak transcription Fetal Muscle Trunk muscle
26 chr1:10010800-10023000 Weak transcription HepG2 liver
27 chr1:10010800-10032000 Weak transcription Rectal Mucosa Donor 31 rectum
28 chr1:10010800-10032000 Weak transcription Thymus Thymus
29 chr1:10010800-10032200 Weak transcription Sigmoid Colon Sigmoid Colon
30 chr1:10010800-10032600 Weak transcription Primary T cells from cord blood blood
31 chr1:10010800-10034800 Weak transcription NHEK skin
32 chr1:10010800-10035000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
33 chr1:10010800-10035600 Weak transcription Fetal Kidney kidney
34 chr1:10010800-10036400 Weak transcription Esophagus oesophagus
35 chr1:10011000-10020600 Weak transcription Psoas Muscle Psoas
36 chr1:10011000-10020800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
37 chr1:10011000-10020800 Weak transcription HUES6 Cell Line embryonic stem cell
38 chr1:10011000-10021000 Weak transcription Muscle Satellite Cultured Cells --
39 chr1:10011000-10021000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
40 chr1:10011000-10021600 Weak transcription Brain Angular Gyrus brain
41 chr1:10011000-10031800 Weak transcription Left Ventricle heart
42 chr1:10011000-10031800 Weak transcription Rectal Smooth Muscle rectum
43 chr1:10011000-10032200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
44 chr1:10011000-10032200 Weak transcription Duodenum Smooth Muscle Duodenum
45 chr1:10011000-10032400 Weak transcription Primary T cells fromperipheralblood blood
46 chr1:10011000-10032600 Weak transcription Cortex derived primary cultured neurospheres brain
47 chr1:10011000-10032600 Weak transcription Fetal Thymus thymus
48 chr1:10011000-10034200 Weak transcription Primary T helper cells fromperipheralblood blood
49 chr1:10011000-10044800 Weak transcription NHDF-Ad bronchial
50 chr1:10011200-10031600 Weak transcription Stomach Smooth Muscle stomach

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Last update: Aug 31, 2015