Variant report

Variant	rs11580276
Chromosome Location	chr1:226202334-226202335
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12756091	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2755095	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs34004046	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34563765	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6656764	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7554619	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1834948	chr1:225874059-226214882	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv524126	chr1:225973777-226210653	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv832747	chr1:226194143-226373415	Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:226192400-226204400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr1:226201600-226202800	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr1:226201600-226203200	Enhancers	K562	blood
4	chr1:226201600-226203400	Enhancers	Spleen	Spleen
5	chr1:226202000-226203600	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr1:226202200-226203000	Enhancers	GM12878-XiMat	blood
7	chr1:226202200-226203200	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr1:226202200-226203200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr1:226202200-226203200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr1:226202200-226203200	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr1:226202200-226204400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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